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Platform GPL6330 Query DataSets for GPL6330
Status Public on Jul 01, 2008
Title Print_850
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Mus musculus
Manufacturer Stanford Functional Genomics Facility, Stanford School of Medicine
Manufacture protocol Material is transferred from microtiter plate wells to the slide surface by an automated print head
Support glass
 
 
Submission date Dec 27, 2007
Last update date Jan 18, 2013
Contact name Li-Fen Lee
E-mail(s) lifenlee@stanford.edu
Phone 650-723-6515
Fax 650-723-9180
Organization name Stanford University
Department Microbiology and Immunology
Lab Fairchild Science Bldg. D341
Street address 299, Campus Dr.
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Samples (40) GSM253504, GSM253505, GSM253506, GSM930300, GSM930301, GSM930304 
Series (2)
GSE10029 Genomic expression profiling of TNFalpha treated BDC2.5 diabetogenic CD4+ T Cells
GSE37938 Arrays of time course experiment (2-28 d) laser microdissected samples of H. pylori -infected mice

Data table header descriptions
ID
MetaColumn
MetaRow
Column
Row
SPOT_ID
Reporter Species
GB_LIST GenBank Accession number
CLONE_ID
Reporter BioSequence Database Entry [preferredName]
Reporter BioSequence Database Entry [riken]
Repoter Biosequence Type
Repoter BioSequence PolymerType
Reporter Group[role]
Reporter ControlType
CompositeSequence Identifier
CompositeSequence Name
embl
geneName
geneSymbol
locus
unigene
CompositeSequence Biosequence Type
CompositeSequence BioSequence PolymerType
Plate Identifier
Plate Row
Plate Column
LUID
Failed
Contaminated
Sequence Verified
Plate Source

Data table
ID MetaColumn MetaRow Column Row SPOT_ID Reporter Species GB_LIST CLONE_ID Reporter BioSequence Database Entry [preferredName] Reporter BioSequence Database Entry [riken] Repoter Biosequence Type Repoter BioSequence PolymerType Reporter Group[role] Reporter ControlType CompositeSequence Identifier CompositeSequence Name embl geneName geneSymbol locus unigene CompositeSequence Biosequence Type CompositeSequence BioSequence PolymerType Plate Identifier Plate Row Plate Column LUID Failed Contaminated Sequence Verified Plate Source
1 1 1 1 1 H3004B01 Mus musculus BG063187,BG076651 H3004B01 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:9230114K14Rik 9230114K14Rik RIKEN cDNA 9230114K14 gene 9230114K14Rik 414108 Mm.383512 gene DNA MMS_1 D 1 176301 0 U U MmNIA;[(384:MmNIA1prt2001_Cd1),(96:MmNIA4b1)]
31 1 1 1 2 H3016H01 Mus musculus BG077561,BG064209 H3016H01 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:Siae Siae Sialic acid acetylesterase Siae 22619 Mm.196345 gene DNA MMS_4 P 1 177525 0 U U MmNIA;[(384:MmNIA13prt2004_Cp1),(96:MmNIA16h1)]
61 1 1 1 3 J0001D08 Mus musculus C75971 J0001D08 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:H2afy H2afy H2A histone family, member Y H2afy 26914 Mm.283802 gene DNA MMS_8 L 1 179037 1 U U MmNIA;[(384:MmNIA29prt2008_Cl1),(96:MmNIA32f1)]
91 1 1 1 4 H3048D01 Mus musculus BG080041,BG066901 H3048D01 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneName:Transcribed locus Transcribed locus Transcribed locus Mm.428616 gene DNA MMS_12 H 1 180549 0 U U MmNIA;[(384:MmNIA45prt2012_Ch1),(96:MmNIA48d1)]
121 1 1 1 5 H3064B01 Mus musculus BG068313,BG081347 H3064B01 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:Ddb2 Ddb2 Damage specific DNA binding protein 2 Ddb2 107986 Mm.389334 gene DNA MMS_16 D 1 182061 0 U U MmNIA;[(384:MmNIA61prt2016_Cd1),(96:MmNIA64b1)]
151 1 1 1 6 H3076H01 Mus musculus BG069392,BG082496 H3076H01 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:Serbp1 Serbp1 Serpine1 mRNA binding protein 1 Serbp1 66870 Mm.240490 gene DNA MMS_19 P 1 183285 0 U U MmNIA;[(384:MmNIA73prt2019_Cp1),(96:MmNIA76h1)]
181 1 1 1 7 J0741B07 Mus musculus AU017589 J0741B07 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:Vps37a Vps37a Vacuolar protein sorting 37A (yeast) Vps37a 52348 Mm.294871 gene DNA MMS_23 L 1 184797 0 U U MmNIA;[(384:MmNIA89prt2023_Cl1),(96:MmNIA92f1)]
211 1 1 1 8 H3108D01 Mus musculus BG072242,BG085076 H3108D01 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:Arfgef1 Arfgef1 **ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited) Arfgef1 211673 Mm.229141 gene DNA MMS_27 H 1 186309 0 U U MmNIA;[(384:MmNIA105prt2027_Ch1),(96:MmNIA108d1)]
241 1 1 1 9 L0062G04 Mus musculus AW550294 L0062G04 cDNA_clone DNA Experimental MMS_31 D 1 187821 2 U U MmNIA;[(384:MmNIA121prt2031_Cd1),(96:MmNIA124b1)]
271 1 1 1 10 H3136H01 Mus musculus BG074579,BG087209 H3136H01 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:Ngb Ngb Neuroglobin Ngb 64242 Mm.41395 gene DNA MMS_34 P 1 189045 0 U U MmNIA;[(384:MmNIA133prt2034_Cp1),(96:MmNIA136h1)]
301 1 1 1 11 H3152F01 Mus musculus BG075850,BG088391 H3152F01 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:Cryl1 Cryl1 Crystallin, lamda 1 Cryl1 68631 Mm.25539 gene DNA MMS_38 L 1 190557 0 U U MmNIA;[(384:MmNIA149prt2038_Cl1),(96:MmNIA152f1)]
331 1 1 1 12 UI-M-AM0-adu-f-09-0-UI Mus musculus BE861157,AI841290 UI-M-AM0-adu-f-09-0-UI cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:Uqcrc1 Uqcrc1 Ubiquinol-cytochrome c reductase core protein 1 Uqcrc1 22273 Mm.335460 gene DNA MMS_42 H 1 172405 0 U U MmBMAP;[(384:MmBMAP24prt2042_Ch1),(96:MmBMAP34d1)]
361 1 1 1 13 IMAGE:1630640 Homo sapiens AA984784 IMAGE:1630640 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:CAMK2A CAMK2A Calcium/calmodulin-dependent protein kinase (CaM kinase) II alpha CAMK2A 815 Hs.143535 gene DNA MMS_46 D 1 175453 0 U U MmRGKG;[(384:MmRGKG3prt2046_Cd1),(96:MmRGKG6b1)]
391 1 1 1 14 EMPTY Not Applicable unknown_sequence unknown_polymer Control control_empty MMS_49 P 1 613372 0 U U null;[(384:MmRGSV8prt2049_Cp1),(96:nullh1)]
421 1 1 1 15 2310047N15 Mus musculus AV090280 2310047N15 R74877 EST:Mouse brain, Stratagene:Mus musculus 2310047N15 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:Tbrg4 Tbrg4 Transforming growth factor beta regulated gene 4 Tbrg4 21379 Mm.247761 gene DNA MMS_53 L 1 151501 2 U U MmRIKN;[(384:MmRIKN13prt2053_Cl1),(96:MmRIKN16f1)]
451 1 1 1 16 2510042H14 Mus musculus AV108025 2510042H14 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:Itgb1 Itgb1 Integrin beta 1 (fibronectin receptor beta) Itgb1 16412 Mm.263396 gene DNA MMR_57 H 1 153013 0 U U MmRIKN;[(384:MmRIKN29prt2057_Ch1),(96:MmRIKN32d1)]
481 1 1 1 17 1810015O20 Mus musculus AV051026 AI415037 EST:Soares mouse p3NMF19.5:Mus musculus 1810015O20 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:Rbpms Rbpms RNA binding protein gene with multiple splicing Rbpms 19663 Mm.323997 gene DNA MMR_61 D 1 154525 0 U U MmRIKN;[(384:MmRIKN45prt2061_Cd1),(96:MmRIKN48b1)]
511 1 1 1 18 1810061I14 Mus musculus AV060123 AA407648 EST:ectoplacental cone:Mus musculus 1810061I14 cDNA_clone DNA Experimental MMR_64 P 1 155749 0 U U MmRIKN;[(384:MmRIKN57prt2064_Cp1),(96:MmRIKN60h1)]
541 1 1 1 19 2610024N24 Mus musculus AV113833 AA271942 EST:fetus:Mus musculus 2610024N24 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:Ranbp3 Ranbp3 RAN binding protein 3 Ranbp3 71810 Mm.29608 gene DNA MMR_68 L 1 157261 0 U U MmRIKN;[(384:MmRIKN73prt2068_Cl1),(96:MmRIKN76f1)]
571 1 1 1 20 CLONE IDENTITY UNKNOWN 28D1 Mus musculus unknown_sequence DNA Control control_unknown_type MMR_72 H 1 618028 0 U U null;[(384:MmRIKN89prt2072_Ch1),(96:MouseUnknown28d1)]

Total number of rows: 42624

Table truncated, full table size 11245 Kbytes.




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Supplementary file Size Download File type/resource
GPL6330.adf.gz 3.0 Mb (ftp)(http) ADF

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