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Platform GPL6704 Query DataSets for GPL6704
Status Public on Jul 01, 2008
Title National University of Singapore NimbleGen 385K Promoter Array version 1
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer NimbleGen Inc.
Manufacture protocol see NimbleGen website
 
 
Web link http://www.nimblegen.com/products/chip/index.html
Submission date Apr 08, 2008
Last update date Jul 01, 2008
Contact name Wah Heng Lee
Organization name Genome Institute of Singapore
Street address 60 Biopolis Street
City Singapore
ZIP/Postal code 138672
Country Singapore
 
Samples (1) GSM280424
Series (2)
GSE11106 Chromatin Immunoprecipitation of UV treated AdHBx cells with anti-HBx antibodies
GSE11108 Study of HepG2 cells transduced with HBX expressing recombinant Adenoviruses (AdHBx) and treated with UV

Data table header descriptions
ID
PROBE_ID Probe Identifier
SEQ_ID Gene identifier
SEQUENCE Probe sequence
PROBE_POS Position of probe in the gene
GB_ACC
CHROMOSOME Chromosome where gene resides
RANGE_GB
RANGE_STRAND
RANGE_START Start position of gene
RANGE_END End position of gene
DESC Gene description

Data table
ID PROBE_ID SEQ_ID SEQUENCE PROBE_POS GB_ACC CHROMOSOME RANGE_GB RANGE_STRAND RANGE_START RANGE_END DESC
3333_0001_0001 CHR1P151819631 HSAP0406S00002405 TCAAGGGATACTGGGTCTCTGCTGAGTGACTCACTGGTATGAGGCTGTTT 4451 NM_144622 chr1 NC_000001.8 - 151804077 151819330 CDS; FLJ32934; hypothetical protein FLJ32934; Homo sapienss hypothetical protein FLJ32934 (FLJ32934), mRNA.
3333_0023_0001 CHR17P040581542 HSAP0406S00029395 CCCGCAAAGGGAACTCCGTTACGCATGCGCACGGGCGGGGCGAAAAAGCT 4691 NM_006460 chr17 NC_000017.9 + 40581651 40585246 CDS; HIS1; HMBA-inducible; Homo sapienss HMBA-inducible (HIS1), mRNA.
3333_0025_0001 CHRYP009259222 HSAP0406S00036900 CTGTGCAGGAGGGGGCGGCCGGGGTGGAGAGTGAGCAGGCGGCTTTGGGG 4931 AK093413 chrY NC_000024.7 + 9259091 9282193 CDS; N/A; N/A; Homo sapienss cDNA FLJ36094 fis, clone TESTI2020717, highly similar to Human testis-specific protein (TSPY) mRNA.
3333_0027_0001 CHR17RP000407725 HSAP0406S00037279 CCACACCCCCGCCAGCTGTCTGGACTTGCACATCTGGGGTGCTGTTTGTC 3891 AK128824 chr17_random + 408634 412138 CDS; N/A; N/A; Homo sapienss cDNA FLJ46160 fis, clone TESTI4002141.
3333_0029_0001 CHR1P231052037 HSAP0406S00003613 GAGACGCGGGGTTGGGGGGGGAGGAGGGCGCGCGTGGTGCCGGTGGGGGG 4721 NM_182972 chr1 NC_000001.8 - 231049512 231052006 CDS; IRF2BP2; interferon regulatory factor 2 binding protein 2; Homo sapienss interferon regulatory factor 2 binding protein 2 (IRF2BP2), mRNA.
3333_0031_0001 CHR2P026898829 HSAP0406S00004003 CCGGCGCCGCTAACTGGAGCGAACCCCAGCGTCCGCCGACATGGCCTGGA 4831 NM_017877 chr2 NC_000002.9 + 26898798 26914715 CDS; C2orf18; chromosome 2 open reading frame 18; Homo sapienss chromosome 2 open reading frame 18 (C2orf18), mRNA.
3333_0033_0001 CHR8P057286952 HSAP0406S00015483 TGAGTGGTTCCCCCGCCCTACCTCCGAAGCGGCCGCAGAAAAGCGGGGAG 4851 AK098285 chr8 NC_000008.9 + 57286901 57292578 CDS; N/A; N/A; Homo sapienss cDNA FLJ40966 fis, clone UTERU2012407.
3333_0035_0001 CHR12P131295064 HSAP0406S00023436 ATCGCAGCGCGCCACGCCCGAGTCCCAGGCGTGCGGCTGGCCATGGCGCT 4771 NM_175066 chr12 NC_000012.9 - 131289275 131295083 CDS; DDX51; DEAD (Asp-Glu-Ala-Asp) box polypeptide 51; Homo sapienss DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 (DDX51), mRNA.
3333_0037_0001 CHR20P004650216 HSAP0406S00033460 TCCAAGGCCGGCCTTTAGGTACAGGACACTATGCATGTCCAGCGAGGCTT 4461 NM_012409 chr20 NC_000020.9 + 4650555 4657105 CDS; PRND; prion-like protein doppel preproprotein; Homo sapienss prion protein 2 (dublet) (PRND), mRNA.
3333_0039_0001 CHR9P113869315 HSAP0406S00017176 CTCACCCCATGCACCAGTGTGGTAAATGAAGGACCATAGAGTGGCTTTTT 4361 AB075832 chr9 NC_000009.9 + 113869754 113892017 CDS; KIAA1952; KIAA1952 protein; Homo sapienss mRNA for KIAA1952 protein.
3333_0041_0001 CHR14P064003598 HSAP0406S00024629 TGCAGATTAGTATCCCCAAACAATTCATTTTCTGACGAAACTCTTAAAGC 4821 M90359 chr14 NC_000014.7 + 64003577 64006174 CDS; AKAP 79; protein kinase; Human cAMP-dpendent protein kinase (AKAP 79) mRNA, complete cds.
3333_0045_0001 CHR1P045626027 HSAP0406S00001168 ATTCCTAGCGCTAATTGGGCAATTCCACTACCTCGTTTATCAGGAGTTGA 4651 AB057597 chr1 NC_000001.8 - 45478648 45625926 CDS; N/A; testicular protein kinase 2; Homo sapienss mRNA for testicular protein kinase 2, complete cds.
3333_0047_0001 CHR1P027893571 HSAP0406S00000752 ACAGACACCTTCTATTATCGTCTTCGGAAGTTACCAGCCTGTGAGATCCA 4321 AK094833 chr1 NC_000001.8 + 27894050 27897326 CDS; N/A; N/A; Homo sapienss cDNA FLJ37514 fis, clone BRCAN2000639.
3333_0051_0001 CHR15P081296493 HSAP0406S00026289 TGCCAGCTTCCCACGCGGTGTCAGTAATTCACCCGTCCTCTAGGAAAACT 4831 AK097947 chr15 NC_000015.8 + 81296462 81300463 CDS; N/A; N/A; Homo sapienss cDNA FLJ40628 fis, clone THYMU2014204, weakly similar to WISKOTT-ALDRICH SYNDROME PROTEIN.
3333_0053_0001 CHR9P095853377 HSAP0406S00016951 AAGGTTCTTGAAGGCCCATTTCCTCATACATGCATACAACAGCTTTTATT 4021 AK095025 chr9 NC_000009.9 + 95854156 95856400 CDS; N/A; N/A; Homo sapienss cDNA FLJ37706 fis, clone BRHIP2017542, moderately similar to Mus musculus mRNA for stretch responsive protein 278 (sr278 gene).
3333_0055_0001 CHR12P100727981 HSAP0406S00022922 TTGCAAGTCTGTTAATTCCACCTGACCATCAAACTGAGGGTGCGAATTTG 3871 NM_024312 chr12 NC_000012.9 - 100641745 100727100 CDS; MGC4170; MGC4170 protein; Homo sapienss MGC4170 protein (MGC4170), mRNA.
3333_0165_0001 CHR17P043390100 HSAP0406S00029478 GCCTTGCCTGATACAGCAGCCCGGAGGCACCACTTGCTTCCCGAGTCTCA 4761 NM_024320 chr17 NC_000017.9 - 43384333 43390109 CDS; MGC11242; hypothetical protein MGC11242; Homo sapienss hypothetical protein MGC11242 (MGC11242), mRNA.
3333_0167_0001 CHR6P101953415 HSAP0406S00012582 AATCTTGGCTTCACGTCAGAAGCTGTGCAGCAGTGCAGTAGAATAGGGCC 4541 NM_175768 chr6 NC_000006.9 + 101953674 102623474 CDS; GRIK2; glutamate receptor 6 isoform 2 precursor; Homo sapienss glutamate receptor, ionotropic, kainate 2 (GRIK2), transcript variant 2, mRNA.
3333_0169_0001 CHR13P020246098 HSAP0406S00023501 GGCGGGAGGGCCTGCGCCTGCGCTAGCGAGACTGGCTAGCCACTCCCACT 4711 NM_174928 chr13 NC_000013.9 - 20201072 20246057 CDS; LOC221143; hypothetical protein LOC221143; Homo sapienss hypothetical protein LOC221143 (LOC221143), mRNA.
3333_0171_0001 CHR2P038063811 HSAP0406S00004160 GCGGAGTGGCAGCAACGCGAGAGGGAACGCGCTGGGGCTAGCGCGGAGGC 4471 AK095462 chr2 NC_000002.9 + 38064140 38137157 CDS; N/A; N/A; Homo sapienss cDNA FLJ38143 fis, clone D9OST2003137, weakly similar to Homo sapienss mRNA for TCPTP-interacting protein (ptpip5 gene).

Total number of rows: 359384

Table truncated, full table size 92286 Kbytes.




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Supplementary file Size Download File type/resource
GPL6704_2006-03-28_HGS17_min_promoter.ndf.gz 20.4 Mb (ftp)(http) NDF
GPL6704_2006-03-28_HGS17_min_promoter.ngd.gz 3.6 Mb (ftp)(http) NGD
GPL6704_2006-03-28_HGS17_min_promoter.pos.gz 2.1 Mb (ftp)(http) POS

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