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Platform GPL6801 Query DataSets for GPL6801
Status Public on Apr 30, 2008
Title [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site

The new Affymetrix® Genome-Wide Human SNP Array 6.0 features 1.8 million genetic markers, including more than 906,600 single nucleotide polymorphisms (SNPs) and more than 946,000 probes for the detection of copy number variation.

Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at

June 03, 2009: annotation table updated with netaffx build 28 (ucsc=hg18; ncbi=NCBI36)
August 01, 2012: annotation table updated with netaffx build 32 (ucsc=hg19; ncbi=GRCh37)
Web link
Submission date Apr 30, 2008
Last update date Nov 27, 2018
Organization Affymetrix, Inc.
Phone 888-362-2447
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
Samples (22856) GSM337641, GSM337642, GSM337643, GSM337644, GSM337645, GSM337646 
Series (403)
GSE13372 High-resolution mapping of copy-number alterations with massively parallel sequencing
GSE13373 Mapping of copy-number alterations with massively parallel sequencing
GSE13429 Identification of candidate predisposing copy number variants in familial and early-onset colorectal cancer patients

Data table header descriptions
ID Unique identifier for the SNP or CNV probe set
Chromosome Chromosome (1-22, X, Y)
RANGE_GB NCBI RefSeq Accession for chromosome (hg19, 37.1)
RANGE_START The start base position of the 5'-most probe in the probe set.
RANGE_STOP The end base position of the 3'-most probe in the probe set.
STRAND The strand (of the reference genome) where the CN probe set or SNP maps.
Physical Position
SNP_ID SNP identifier from dbSNP
Allele A
Allele B

Data table
ID Chromosome RANGE_GB RANGE_START RANGE_STOP STRAND Physical Position SNP_ID Allele A Allele B
SNP_A-1780419 1 NC_000001.10 - 84875173 rs6576700 A G
SNP_A-1780418 5 NC_000005.9 - 156390980 rs17054099 C T
SNP_A-1780415 5 NC_000005.9 - 158729947 rs7730126 A G
SNP_A-1780414 9 NC_000009.11 + 22976592 rs2061700 A C
SNP_A-1780413 11 NC_000011.9 + 26300969 rs10834942 A G
SNP_A-1780412 5 NC_000005.9 + 123078585 rs17419765 C T
SNP_A-1780379 13 NC_000013.10 + 77436808 rs7995987 G T
SNP_A-1780410 2 NC_000002.11 + 225226512 rs16865866 A G
SNP_A-1780378 8 NC_000008.10 - 119412451 rs7828844 A G
SNP_A-1780377 11 NC_000011.9 + 6409790 rs11040883 A G
SNP_A-1780376 6 NC_000006.11 - 169952778 rs730002 A G
SNP_A-1780375 7 NC_000007.13 - 12987060 rs2024406 A G
SNP_A-1780374 2 NC_000002.11 - 135285678 rs515983 A G
SNP_A-1780373 14 NC_000014.8 + 75267941 rs2287407 A G
SNP_A-1780372 6 NC_000006.11 + 3622751 rs35877559 C T
SNP_A-1780371 9 NC_000009.11 - 119583730 rs10759862 A G
SNP_A-1780370 2 NC_000002.11 + 227268591 rs13032261 A C
SNP_A-1780409 4 NC_000004.11 - 159982551 rs34227797 C G
SNP_A-1780408 14 NC_000014.8 + 27493392 rs1245317 G T
SNP_A-1780405 15 NC_000015.9 - 58479008 rs17240650 A G

Total number of rows: 1880794

Table truncated, full table size 90265 Kbytes.

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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