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Platform GPL6851 Query DataSets for GPL6851
Status Public on May 22, 2008
Title Boothroyd Lab Toxoplasma gondii bradyzoite 4K
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Toxoplasma gondii
Manufacturer Boothroyd Lab, Stanford University
Manufacture protocol PCR products (generated by using 5 ┬Ál of overnight bacterial culture as a template) were ethanol precipitated, dried, resuspended in 3x SSC (1x SSC is 0.15 M NaCl plus 0.015 M sodium citrate), and spotted onto poly-L-lysine-treated glass slides.
Support glass
Coating polysine
 
 
Contributor(s) Boyle JP, Cleary M, Singh U, Blader I, Boothroyd JC
Submission date May 09, 2008
Last update date May 22, 2008
Contact name Jon Boyle
E-mail(s) boylej@stanford.edu
Organization name Stanford University School of Medicine
Department Microbiology and Immunology
Lab Boothroyd Lab
Street address 299 Campus Drive
City Stanford
State/province CA
ZIP/Postal code 92305
Country USA
 
Samples (24) GSM288465, GSM288466, GSM288467, GSM288468, GSM288469, GSM288470 
Series (2)
GSE11437 Expression QTL mapping of Toxoplasma gondii genes, Bradyzoite array
GSE11515 Expression QTL mapping of Toxoplasma gondii genes

Data table header descriptions
ID
CloneID Tgzz-based number that cross-references in GenBank (if available)
GB_ACC GenBank Accession number
Ctoxoqual1 Old EST nomenclature
Anno Manual Annotation Notes
Anno2 More manual annotation notes
SPOT_ID
Ctoxoqual2 Old EST nomenclature

Data table
ID CloneID GB_ACC Ctoxoqual1 Anno Anno2 SPOT_ID Ctoxoqual2
251102 tgzz66a05.r1 AA520938 SHORT EST
251103 tgzz45g06.r1 AA531961 Ctoxoqual_880 ESTs Ctoxoqual4_821
251106 tgzz65b01.r1 AA520906 Ctoxoqual_401 GRA4 TR:G161922 G161922 DENSE GRANULE PROTEIN PRECURSOR. ; Ctoxoqual4_374
251107 tgzz56c08.r1 AA519497 Ctoxoqual_1406 GRA5 Tachy Ctoxoqual4_4388
251109 tgzz37e09.r1 AA520276 Ctoxoqual_3273 ROP2/8 Tachy Ctoxoqual4_3096
251110 tgzz26b04.r1 AA532043 Ctoxoqual_1406 GRA5 Tachy Ctoxoqual4_4388
251114 tgzz59d05.r1 AA520421 Ctoxoqual_4385 ESTs Ctoxoqual4_5729
251116 tgzz48c07.r1 AA531867 Ctoxoqual_1101 60S L11 HOMO WP:F07D10.1 CE07033 RIBOSOMAL PROTEIN ; Ctoxoqual4_1021
251119 tgzz55d04.r1 AA519435 HOST cross hyb
251121 tgzz32f05.r1 AA531887 Ctoxoqual_4252 BETAACTIN (HOST by array) gb:X63432_cds1 ACTIN, CYTOPLASMIC 1 (HUMAN); Ctoxoqual4_5606
251126 tgzz54g08.r1 AA519302 Ctoxoqual_3993 ESTs Brady Ctoxoqual4_5365
251128 tgzz61h06.r1 AA520524 EST
251132 tgzz28a04.r1 AA519714 Ctoxoqual_4019 CYCLOPHILLIN HOMO (HOST?) gb:X52851_rna1 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A (HUMAN); Ctoxoqual4_5388
251133 tgzz67a02.r1 AA520664 HOST crosshyb
251134 tgzz63a01.r1 AA520644 Ctoxoqual_3973 ESTs Brady Ctoxoqual4_5346
251140 tgzz57c05.r1 AA519908 Ctoxoqual_4203 HSC70 INTERACTING PROTEIN HOMO TR:G309692 G309692 HEAT SHOCK-RELATED PROTEIN. ; Ctoxoqual4_5562
251141 tgzz38e06.r1 AA520128 Ctoxoqual_1032 ESTs Tachy Ctoxoqual4_959
251142 tgzz53c04.r1 AA520234 Ctoxoqual_4057 ESTs Ctoxoqual4_5424
251143 tgzz45f11.r1 AA531957 Ctoxoqual_101 CYST WALL ANTIGEN TR:G520474 G520474 65 KDA CYST MATRIX PROTEIN. ; Ctoxoqual4_94
251147 tgzz56h08.r1 AA519531 Ctoxoqual_4039 ESTs Ctoxoqual4_5407

Total number of rows: 4403

Table truncated, full table size 276 Kbytes.




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