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Platform GPL6968 Query DataSets for GPL6968
Status Public on Jul 21, 2008
Title Agilent Human miRNA Microarray, pre-commercial version 6.0
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol See manufacturer's web site at http://www.agilent.com/
Support glass
 
Description Agilent design ID 015508. miRNA probes were designed using Sanger miRBase, release 9.1.
Platform data table represents all of the replicate probes per miRNA.

*** The ID column represents Agilent Feature Extraction feature numbers. A different version of this platform with ascending integers (i.e., 1 to 470) in the ID column, arbitrarily assigned to the unique miRNAs, is assigned accession number GPL7341.
 
Web link http://www.agilent.com
Contributor(s) Ach RA, Wang H, Curry B
Submission date Jun 16, 2008
Last update date Sep 22, 2008
Contact name Robert Ach
Organization name Agilent Technologies
Department Agilent Laboratories
Street address 5301 Stevens Creek Boulevard
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (42) GSM298663, GSM298665, GSM298670, GSM298695, GSM298715, GSM298739 
Series (2)
GSE11840 miRNA Microarray Profiling with Three Different Total RNA Prep Methods
GSE11879 miRNA Microarray Profiling: multiple tissues and cell lines

Data table header descriptions
ID
Row Row location for the feature on the microarray
Col Column location for the feature on the microarray
ProbeUID Unique integer for each unique probe in the array design
ControlType Feature control type: 0 = non-control, 1 = positive control, -1 = negative control
ProbeName An Agilent-assigned identifier for the probe synthesized on the microarray
GeneName An identifier for the gene for which the probe provides expression information
miRNA_ID miRBase microRNA ID
SPOT_ID spot identifier

Data table
ID Row Col ProbeUID ControlType ProbeName GeneName miRNA_ID SPOT_ID
1 1 1 0 1 miRNABrightCorner35 BrightCorner CONTROL
2 1 2 2 -1 DarkCorner DarkCorner CONTROL
3 1 3 3 0 A_25_P00010934 hsa-miR-568 hsa-miR-568
4 1 4 5 1 P_25_P00011206 Ctrl_00011206 CONTROL
6 1 6 8 0 A_25_P00010378 hsa-miR-323 hsa-miR-323
7 1 7 10 0 A_25_P00010533 hsa-miR-614 hsa-miR-614
8 1 8 11 0 A_25_P00010820 hsa-miR-593 hsa-miR-593
9 1 9 13 0 A_25_P00010490 hsa-miR-150 hsa-miR-150
10 1 10 15 0 A_25_P00010701 hsa-miR-199a hsa-miR-199a
12 1 12 15 0 A_25_P00010701 hsa-miR-199a hsa-miR-199a
13 1 13 18 0 A_25_P00010239 hsa-miR-190 hsa-miR-190
14 1 14 20 0 A_25_P00010229 hsa-miR-623 hsa-miR-623
15 1 15 21 0 A_25_P00011121 hsa-miR-552 hsa-miR-552
16 1 16 23 0 A_25_P00010098 hsa-miR-494 hsa-miR-494
17 1 17 24 0 A_25_P00010466 hsa-miR-33 hsa-miR-33
18 1 18 26 0 A_25_P00010400 hsa-miR-204 hsa-miR-204
19 1 19 28 0 A_25_P00010770 hsa-miR-195 hsa-miR-195
20 1 20 30 0 A_25_P00010750 hsa-miR-562 hsa-miR-562
21 1 21 32 0 A_25_P00010928 hsa-miR-587 hsa-miR-587
22 1 22 34 0 A_25_P00010757 hsa-miR-654 hsa-miR-654

Total number of rows: 10993

Table truncated, full table size 622 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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