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Platform GPL6988 Query DataSets for GPL6988
Status Public on Jun 23, 2008
Title Illumina HumanExon510-Sv1 DNA Analysis BeadChip (HumanExon510Sv1_D)
Technology type oligonucleotide beads
Distribution commercial
Organism Homo sapiens
Manufacturer Illumina, Inc.
Manufacture protocol See manufacturer's website
Catalog number WG-31-411
 
Description over 510,000 markers to interrogate human genetic variation using SNP and copy number variation (CNV) probes
 
Web link http://www.illumina.com/pages.ilmn?ID=233
Submission date Jun 20, 2008
Last update date Oct 24, 2011
Organization Illumina Inc.
E-mail(s) expression@illumina.com, techsupport@illumina.com
Phone 1 800 809 4566
URL http://www.illumina.com
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Samples (422) GSM596169, GSM596170, GSM596171, GSM596172, GSM596173, GSM596174 
Series (4)
GSE24245 Genome-wide SNP array data from Human Variation Panel by Illumina 510S
GSE24277 Human Variation Panel: Gene Expression and Genotype
GSE24890 Genome-wide copy number variation in human metastatic melanoma cell lines

Data table header descriptions
ID IlmnID
Name
SNP_ID ncbi SNP accession
PROBE #PROBE = PROBE Name
IlmnStrand
SNP
AddressA_ID
AlleleA_ProbeSeq
AddressB_ID
AlleleB_ProbeSeq
GenomeBuild
Chr
MapInfo
Ploidy
Species
Source
SourceVersion
SourceStrand
SEQUENCE SourceSeq
TopGenomicSeq
BeadSetId
CNV_Probe
Intensity_Only
Exp_Clusters

Data table
ID Name SNP_ID PROBE IlmnStrand SNP AddressA_ID AlleleA_ProbeSeq AddressB_ID AlleleB_ProbeSeq GenomeBuild Chr MapInfo Ploidy Species Source SourceVersion SourceStrand SEQUENCE TopGenomicSeq BeadSetId CNV_Probe Intensity_Only Exp_Clusters
rs3823184-107_T_F_IFB1161211720:0 rs3823184 rs3823184 TOP [A/G] 10008 TTTTCTGTGTTTTAGGAATGAAGAAAGGCGATCAGCTTCAGTAGATTCAC 36 6 7551298 diploid Homo sapiens dbSNP;refSNP 107 TOP ATTAACATTCTTTTCTGTGTTTTAGGAATGAAGAAAGGCGATCAGCTTCAGTAGATTCAC[G/A]GCAGTCTGGTGGAAGCTATTTGGATGCTGAGTGTTCACGACATAGAAGGGATAGGAGTAG ATTAACATTCTTTTCTGTGTTTTAGGAATGAAGAAAGGCGATCAGCTTCAGTAGATTCAC[A/G]GCAGTCTGGTGGAAGCTATTTGGATGCTGAGTGTTCACGACATAGAAGGGATAGGAGTAG 1161420806 0 0 3
rs723490-126_T_R_IFB1161253789:0 rs723490 rs723490 TOP [A/G] 10010 CTTTGGAGTTCTTAAACTATTCTCAGCCTCCAGATGCTTGGAATTGTATA 36 3 145171451 diploid Homo sapiens dbSNP;refSNP 126 BOT TTCAAAATTCAAATTGTGTAGACTAGTAACCGTGTTTTATTTCCATGTTTCAAATGATGC[C/T]TATACAATTCCAAGCATCTGGAGGCTGAGAATAGTTTAAGAACTCCAAAGACCTATTCGA TCGAATAGGTCTTTGGAGTTCTTAAACTATTCTCAGCCTCCAGATGCTTGGAATTGTATA[A/G]GCATCATTTGAAACATGGAAATAAAACACGGTTACTAGTCTACACAATTTGAATTTTGAA 1161420806 0 0 3
rs4955547-123_T_F_IFB1161227890:0 rs4955547 rs4955547 TOP [A/G] 10014 AATTAAGCTTGGCTCCTGCGAGGAAATTAGGCAGAATCAACTAAGGATGC 36 3 135817665 diploid Homo sapiens dbSNP;refSNP 123 TOP CAGTCTGGGGAATTAAGCTTGGCTCCTGCGAGGAAATTAGGCAGAATCAACTAAGGATGC[A/G]GGCAACTGAGGCAAAAAGAGAGACATTAATGTTGGATGATAGAAAGTCAGAAGGAAACTG CAGTCTGGGGAATTAAGCTTGGCTCCTGCGAGGAAATTAGGCAGAATCAACTAAGGATGC[A/G]GGCAACTGAGGCAAAAAGAGAGACATTAATGTTGGATGATAGAAAGTCAGAAGGAAACTG 1161420806 0 0 3
rs8011562-126_T_R_IFB1161267227:0 rs8011562 rs8011562 TOP [A/G] 10017 ATCTTAAAGGAAGCAGCAGAGGTCCCAGGGCTTAAGGCTGCAAAGCATCC 36 14 72823182 diploid Homo sapiens dbSNP;refSNP 126 BOT CAGCAATAATATCATATAAACAGTATTACTGTTAAATCTCTCTGCTAGCATCATAGTCCG[C/T]GGATGCTTTGCAGCCTTAAGCCCTGGGACCTCTGCTGCTTCCTTTAAGATGCAGGTACTT AAGTACCTGCATCTTAAAGGAAGCAGCAGAGGTCCCAGGGCTTAAGGCTGCAAAGCATCC[A/G]CGGACTATGATGCTAGCAGAGAGATTTAACAGTAATACTGTTTATATGATATTATTGCTG 1161420806 0 0 3
rs9468805-123_B_R_IFB1161276674:0 rs9468805 rs9468805 BOT [T/C] 10021 CACAACCCATGTGGCTAATCCAGGGATACTTACTTAAAGAGCTGGGGCTA 36 6 30751688 diploid Homo sapiens dbSNP;refSNP 123 TOP CAGGAAACTGACTCTTGTACATACTTACTTCATTTTGCAGCAATTTCAGATTTAGTATTC[G/A]TAGCCCCAGCTCTTTAAGTAAGTATCCCTGGATTAGCCACATGGGTTGTGTCATACACTA CAGGAAACTGACTCTTGTACATACTTACTTCATTTTGCAGCAATTTCAGATTTAGTATTC[A/G]TAGCCCCAGCTCTTTAAGTAAGTATCCCTGGATTAGCCACATGGGTTGTGTCATACACTA 1161420806 1 0 3
rs2400669-123_T_R_IFB1161184024:0 rs2400669 rs2400669 TOP [A/C] 10022 AGTTTGAGAGTTCTTAGTTTAAGGAAGTGAAATATCTATTAAGTGCCTCT 36 14 99000876 diploid Homo sapiens dbSNP;refSNP 123 BOT CACCAATTCAAATTCATAATTTTAAAAAGTTACCAAATTACACTAACTTGCTAAAACAAG[T/G]AGAGGCACTTAATAGATATTTCACTTCCTTAAACTAAGAACTCTCAAACTACAGCATGTA TACATGCTGTAGTTTGAGAGTTCTTAGTTTAAGGAAGTGAAATATCTATTAAGTGCCTCT[A/C]CTTGTTTTAGCAAGTTAGTGTAATTTGGTAACTTTTTAAAATTATGAATTTGAATTGGTG 1161420806 0 0 3
rs1058465-106_T_F_IFB1161110088:0 rs1058465 rs1058465 TOP [A/C] 10025 CGGTCTTCGTCGATGCCTGACTCAGGCAGGCCAGCTTTCCGCGTGGTGGA 36 X 46973099 diploid Homo sapiens dbSNP;refSNP 106 TOP CGGTCTTCGTCGATGCCTGACTCAGGCAGGCCAGCTTTCCGCGTGGTGGA[C/A]ACCGAGTTCTAAGCCACAGACCGAGGCCCCAGCAGGCAGCGGCTGGAGGG CGGTCTTCGTCGATGCCTGACTCAGGCAGGCCAGCTTTCCGCGTGGTGGA[A/C]ACCGAGTTCTAAGCCACAGACCGAGGCCCCAGCAGGCAGCGGCTGGAGGG 1161420806 0 0 3
rs5999-126_T_F_IFB1161234109:0 rs5999 rs5999 TOP [A/G] 10035 GGTAGCCTGTGAGGAACCACCCTTCATTGAAAATGGTGCAGCAAATTTAC 36 1 195292888 diploid Homo sapiens dbSNP;refSNP 126 TOP GACAGGAGAAGGTAGCCTGTGAGGAACCACCCTTCATTGAAAATGGTGCAGCAAATTTAC[G/A]CTCTAAGATTTATTACAATGGGGATAAAGTGACATATGCATGTAAAAGCGGCTACCTTCT GACAGGAGAAGGTAGCCTGTGAGGAACCACCCTTCATTGAAAATGGTGCAGCAAATTTAC[A/G]CTCTAAGATTTATTACAATGGGGATAAAGTGACATATGCATGTAAAAGCGGCTACCTTCT 1161420806 1 0 3
rs2013854-126_B_R_IFB1161162309:0 rs2013854 rs2013854 BOT [T/C] 10037 AAAAATGACCAAAGAAAGTTCCATCCAGGAGTCCCTGGGCTTGGCAGGCT 36 4 15633983 diploid Homo sapiens dbSNP;refSNP 126 TOP CATGGCCACGGACGGTGGCTCTCCCCAAGCCAGCTCTCAGGGAACAAGAAAAGAGTGAGC[A/G]AGCCTGCCAAGCCCAGGGACTCCTGGATGGAACTTTCTTTGGTCATTTTTGCCCACTGCT CATGGCCACGGACGGTGGCTCTCCCCAAGCCAGCTCTCAGGGAACAAGAAAAGAGTGAGC[A/G]AGCCTGCCAAGCCCAGGGACTCCTGGATGGAACTTTCTTTGGTCATTTTTGCCCACTGCT 1161420806 0 0 3
rs16987048-123_B_F_IFB1161149544:0 rs16987048 rs16987048 BOT [T/G] 10040 GCCCTGTAAGGTGGACTCGTGGGCGAACCGCTTTTGGCAGACGTCACACA 36 19 61393262 diploid Homo sapiens dbSNP;refSNP 123 BOT TCCTCTTGTGGCCCTGTAAGGTGGACTCGTGGGCGAACCGCTTTTGGCAGACGTCACACA[T/G]GTAGGGCCTCTCGCCAGTGTGGACTCGCTGGTGAACTCGGAGGTCTGAGGGCTGCAAGAA TTCTTGCAGCCCTCAGACCTCCGAGTTCACCAGCGAGTCCACACTGGCGAGAGGCCCTAC[A/C]TGTGTGACGTCTGCCAAAAGCGGTTCGCCCACGAGTCCACCTTACAGGGCCACAAGAGGA 1161420806 0 0 3
rs8019730-126_B_F_IFB1161267374:0 rs8019730 rs8019730 BOT [T/C] 10044 CCTTCTCTACTGTGCAGGAGGGAAGCAGCTTGTGGGCACTGTAGCCTAAA 36 14 93281086 diploid Homo sapiens dbSNP;refSNP 126 BOT AGGGACACACCCTTCTCTACTGTGCAGGAGGGAAGCAGCTTGTGGGCACTGTAGCCTAAA[C/T]GGGTCTCTTGCCCTGCAGCCTGTAGCCCGGGGCGGGGGTGGGAGGGGAGTGTCCCCGGGA TCCCGGGGACACTCCCCTCCCACCCCCGCCCCGGGCTACAGGCTGCAGGGCAAGAGACCC[A/G]TTTAGGCTACAGTGCCCACAAGCTGCTTCCCTCCTGCACAGTAGAGAAGGGTGTGTCCCT 1161420806 0 0 3
rs941986-126_T_F_IFB1161276218:0 rs941986 rs941986 TOP [A/G] 10047 ACTAGTAGTAGTGGTAAGTGGATGGGTTTACTCAAGATATTTCCAGTCAT 36 6 126250722 diploid Homo sapiens dbSNP;refSNP 126 TOP TAATAGTACTACTAGTAGTAGTGGTAAGTGGATGGGTTTACTCAAGATATTTCCAGTCAT[A/G]TTTTTTTCTTACACATATTTGAAAGTATTACTATTTTTATTTATTTTCAACTTTTATTTT TAATAGTACTACTAGTAGTAGTGGTAAGTGGATGGGTTTACTCAAGATATTTCCAGTCAT[A/G]TTTTTTTCTTACACATATTTGAAAGTATTACTATTTTTATTTATTTTCAACTTTTATTTT 1161420806 0 0 3
rs2294041-126_T_R_IFB1161179340:0 rs2294041 rs2294041 TOP [A/C] 10048 CTAGCATGAACGTGAGAGTTACCCTGGCCCCACGGCACGAACGTGAGAGA 36 8 1845056 diploid Homo sapiens dbSNP;refSNP 126 BOT CCGTTCACCCGCCGGAGAGCCTGGCCGTGGTTGCTAACGCGAAACCAAGTAAGTGATGCT[G/T]TCTCTCACGTTCGTGCCGTGGGGCCAGGGTAACTCTCACGTTCATGCTAGCCGTGGGGCC GGCCCCACGGCTAGCATGAACGTGAGAGTTACCCTGGCCCCACGGCACGAACGTGAGAGA[A/C]AGCATCACTTACTTGGTTTCGCGTTAGCAACCACGGCCAGGCTCTCCGGCGGGTGAACGG 1161420806 0 0 3
rs2232032-98_T_R_IFB1161170583:0 rs2232032 rs2232032 TOP [A/G] 10050 ATCTTCTGGATACAGGCTCAGGGCCACCGAGTCCACTTCCAGCACCTGGA 36 14 73893396 diploid Homo sapiens dbSNP;refSNP 98 BOT GAGGCCAAGCAGGTCCTGTCTTCCTTCACTCTCCCCACCTGCCGGGAGGGAGGCCCTGGC[C/T]TCCAGGTGCTGGAAGTGGACTCGGTGGCCCTGAGCCTGTATCCAGAAGATGCTCCACGGA TCCGTGGAGCATCTTCTGGATACAGGCTCAGGGCCACCGAGTCCACTTCCAGCACCTGGA[A/G]GCCAGGGCCTCCCTCCCGGCAGGTGGGGAGAGTGAAGGAAGACAGGACCTGCTTGGCCTC 1161420806 0 0 3
rs10005231-126_T_R_IFB1161282566:0 rs10005231 rs10005231 TOP [A/G] 10053 GGCAAACAAAACAAATTAAAAGAGGGCATGTTGTACAAAGAGGTATGCTC 36 4 154410339 diploid Homo sapiens dbSNP;refSNP 126 BOT TAAGCAGACATAGCTATATAAAGTATTTATCCCCTTAGTTACCACTGCTTTGAAGCCCAG[C/T]GAGCATACCTCTTTGTACAACATGCCCTCTTTTAATTTGTTTTGTTTGCCTGGCGAACAT ATGTTCGCCAGGCAAACAAAACAAATTAAAAGAGGGCATGTTGTACAAAGAGGTATGCTC[A/G]CTGGGCTTCAAAGCAGTGGTAACTAAGGGGATAAATACTTTATATAGCTATGTCTGCTTA 1161420806 0 0 3
rs203674-126_T_F_IFB1161163074:0 rs203674 rs203674 TOP [A/C] 10056 ACAATCTGAGTATTTCCCATTCTAAGAAGAAAAAGCTTTATTGATTAGAT 36 1 194951248 diploid Homo sapiens dbSNP;refSNP 126 TOP CATCTAATAAACAATCTGAGTATTTCCCATTCTAAGAAGAAAAAGCTTTATTGATTAGAT[A/C]TACTAATAAATAGGTACCGTACAAAAATAATCTATGACTGGTGAGAATTTGTTGTCGTAA CATCTAATAAACAATCTGAGTATTTCCCATTCTAAGAAGAAAAAGCTTTATTGATTAGAT[A/C]TACTAATAAATAGGTACCGTACAAAAATAATCTATGACTGGTGAGAATTTGTTGTCGTAA 1161420806 1 0 3
rs2271173-126_B_F_IFB1161174408:0 rs2271173 rs2271173 BOT [T/C] 10059 CAAACTGAAAAATTAGCACCCGGATGTGAAAAATACAATCTTTTTGAGAG 36 4 47867023 diploid Homo sapiens dbSNP;refSNP 126 BOT GTGTTGTAGACAAACTGAAAAATTAGCACCCGGATGTGAAAAATACAATCTTTTTGAGAG[C/T]AGTAAGTATTCATTTTATTCCATAATTATATTGTGCTTAGAATGAACGTATTATTGGTAT ATACCAATAATACGTTCATTCTAAGCACAATATAATTATGGAATAAAATGAATACTTACT[A/G]CTCTCAAAAAGATTGTATTTTTCACATCCGGGTGCTAATTTTTCAGTTTGTCTACAACAC 1161420806 0 0 3
rs748741-126_B_F_IFB1161257614:0 rs748741 rs748741 BOT [T/C] 10064 TGCACTAACTGACCAAACACACGTGGGGAGAATGTTTGCGTCTCCCTGCA 36 9 126129596 diploid Homo sapiens dbSNP;refSNP 126 BOT GGCATCTTCCTGCACTAACTGACCAAACACACGTGGGGAGAATGTTTGCGTCTCCCTGCA[C/T]GGTCACCAGGACCGCTGGGGGCTGCTGGGGCACAGACAGGTCCCCCTTACCTAGGGAGTG CACTCCCTAGGTAAGGGGGACCTGTCTGTGCCCCAGCAGCCCCCAGCGGTCCTGGTGACC[A/G]TGCAGGGAGACGCAAACATTCTCCCCACGTGTGTTTGGTCAGTTAGTGCAGGAAGATGCC 1161420806 0 0 3
rs10475542-119_B_R_IFB1161289850:0 rs10475542 rs10475542 BOT [T/C] 10066 AGAGGAGTGCAATTAGGGCTTTTCTTGATTGAGATAGTATTCCTCAGAAA 36 5 169712529 diploid Homo sapiens dbSNP;refSNP 119 TOP CACTGTTAAGAGTACTGCATTGTATTCTAATTATATGAATCTCGGTCATTCCTTTATGAC[A/G]TTTCTGAGGAATACTATCTCAATCAAGAAAAGCCCTAATTGCACTCCTCTCCTATCCCGG CACTGTTAAGAGTACTGCATTGTATTCTAATTATATGAATCTCGGTCATTCCTTTATGAC[A/G]TTTCTGAGGAATACTATCTCAATCAAGAAAAGCCCTAATTGCACTCCTCTCCTATCCCGG 1161420806 0 0 3
rs11191439-126_B_F_IFB1161117943:0 rs11191439 rs11191439 BOT [T/C] 10072 ATGCCAAGTTATTTACAATGGAGGAATTACAGGACATGAAAAAGAACTAA 36 10 104628713 diploid Homo sapiens dbSNP;refSNP 126 BOT CAACCAAGAGATGCCAAGTTATTTACAATGGAGGAATTACAGGACATGAAAAAGAACTAA[T/C]GTTTGATGCCAATTTTACATTTAAGGTAAATAAAACAATTTCCATGACTTCTGGTATTCT AGAATACCAGAAGTCATGGAAATTGTTTTATTTACCTTAAATGTAAAATTGGCATCAAAC[A/G]TTAGTTCTTTTTCATGTCCTGTAATTCCTCCATTGTAAATAACTTGGCATCTCTTGGTTG 1161420806 0 0 3

Total number of rows: 511354

Table truncated, full table size 225807 Kbytes.




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Supplementary file Size Download File type/resource
GPL6988_HumanExon510Sv1_D.csv.gz 53.4 Mb (ftp)(http) CSV

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