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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 04, 2008 |
| Title |
[Sc03b_MF] Affymetrix GeneChip S. cerevisiae Tiling 1.0F Array |
| Technology type |
in situ oligonucleotide |
| Distribution |
commercial |
| Organism |
Saccharomyces cerevisiae |
| Manufacturer |
Affymetrix |
| Manufacture protocol |
Designed for identifying novel transcripts, mapping sites of protein/DNA interaction in chromatin immunoprecipitation (ChIP) experiments, and other whole-genome experiments
Single array comprised of over 3.2 million perfect match/mismatch probe pairs tiled through the complete Saccharomyces cerevisiae genome.
The array also contains probes to interrogate a 2-µm circle plasmid (NCBI Accession J01347).
Probes are tiled at an average of 5 base pair resolution, as measured from the central position of adjacent 25-mer oligos, creating an overlap of approximately 20 base pairs on adjacent probes.
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| Description |
Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html
BPMAP and other files can be downloaded from the Affymetrix Web site below.
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| Web link |
http://www.affymetrix.com/support/technical/libraryfilesmain.affx
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| Submission date |
Sep 04, 2008 |
| Last update date |
May 13, 2010 |
| Organization |
Affymetrix, Inc. |
| E-mail(s) |
geo@ncbi.nlm.nih.gov, support@affymetrix.com
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| Phone |
888-362-2447
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| URL |
http://www.affymetrix.com/index.affx
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| Street address |
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| City |
Santa Clara |
| State/province |
CA |
| ZIP/Postal code |
95051 |
| Country |
USA |
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| Samples (63)
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GSM298515, GSM298517, GSM298519, GSM298521, GSM303389, GSM303390
GSM303391, GSM303392, GSM303393, GSM306005, GSM306007, GSM306008, GSM306009, GSM306010, GSM306011, GSM306012, GSM306013, GSM306030, GSM390290, GSM390291, GSM543116, GSM543119, GSM554068, GSM554069, GSM559070, GSM559071, GSM559072, GSM559073, GSM739672, GSM739673, GSM739674, GSM739677, GSM739678, GSM739679, GSM739697, GSM1040494, GSM1040495, GSM1040496, GSM2127820, GSM2127821, GSM2127822, GSM2127823, GSM2127824, GSM2127825, GSM2127826, GSM2127827, GSM2127828, GSM2127829, GSM2127830, GSM2127831, GSM2127832, GSM2127833, GSM2127834, GSM2127835, GSM2127844, GSM2127845, GSM2127846, GSM2127847, GSM2127848, GSM2127849, GSM2127854, GSM2127855, GSM2127858
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| Series (12)
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| GSE11800 |
Annotating Low Abundance and Transient RNAs in Yeast using Tiling Microarrays |
| GSE11802 |
Annotating Low Abundance and Transient RNAs in Yeast using Tiling Microarrays and Ultra High-throughput Sequencing |
| GSE11988 |
Comparison of genome wide binding of S. cerevisiae condensin, topo II and cohesin by ChIP |
| GSE12149 |
Chip-chip of condensin subunits Brn1 and Smc4 and Scc2/4 and cohesin and Tfc3 (TFIIIC) on budding yeast chromosomes |
| GSE15607 |
An Rtt109-independent role for Vps75 in transcription-associated nucleosome dynamics |
| GSE21814 |
γH2A is a component of yeast heterochromatin required for telomere elongation |
| GSE22257 |
The Smc3 deacetylase Hos1 closes the cohesin acetylation cycle |
| GSE22514 |
Abf1 and Rap1 effect on nucleosome occupancy in yeast |
| GSE29860 |
Spo11-accessory proteins link DNA double-strand break sites to the chromosome axis in early meiotic recombination |
| GSE42456 |
Budding yeast Wapl controls sister chromatid cohesion maintenance and the chromosome condensation status [BrdU-ChIP]. |
| GSE42460 |
Budding yeast Wapl controls sister chromatid cohesion maintenance and the chromosome condensation status |
| GSE80464 |
Evidence for cohesin sliding along budding yeast chromosomes |
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| Supplementary data files not provided |
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