NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL7390 Query DataSets for GPL7390
Status Public on Dec 01, 2008
Title AbC ELTE_human_960_v1
Technology type antibody
Distribution non-commercial
Organism Homo sapiens
Manufacturer Eotvos Lorand University, Budapest, Hungary
Manufacture protocol Antigens were spotted in triplicates of three dilutions (1x, 5x, 125x) onto home made nitrocellulose chip. Dilutions were carry out in 0.05% Tween 20 containing PBS. BioOdyssey Calligrapher (Bio-Rad) was used for the printing with the following program:
sourceselect Run = No
substrate Type = Slides
Number of Slides in Y= 4
Number of Slides in X= 4
Slide Size = standard
Substrate Size in Millimeters in X= 75.500
Substrate Size in Millimeters in Y= 25.350
[Grid Layout]
Source plate Type= 384
Number of Source plate Rows= 8
Number of Source plate columns= 12
Number of Dips per Source plate= 96
Pin Type= solid
Pin Distance = 4.5mm
Number of pins in Y= 2
Number of pins in X= 2
Number of samples = 256
Number of Spots to be printed = 1536
Replicate Spots per Grid in X= 1
Replicate Spots per Grid in Y= 3
Use Advanced parameters = Yes
[Grid Advanced]
Top Left Grid Margin in x= 5.000 (mm)
Top Left Grid Margin in Y= 5.000 (mm)
Bottom Right Grid Margin in x= 8.150 (mm)
Bottom Right Grid Margin in Y= 5.000 (mm)
Distance between Spots in x= 550.000 (micron)
Distance between Spots in Y= 550.000 (micron)
No. of Spots per Grid in X= 8
No. of Spots per Grid in Y= 6
No. of Total Spots per Grid= 48
No. of Reprints of the Same Spot= 1
Grid printing Direction= Left-right, Top-down
No. of Different supergrids in x= 2
No. of Different supergrids in Y= 2
Total Number of supergrids= 4
Distance between supergrids in x= 4.500 (mm)
Distance between supergrids in Y= 4,500 (mm)
Supergrid printing Direcrion= Left-right, Top-down
No. of Duplicate supergrid clusters ln x= 2
No. of Duplicate supergrid clusters in Y= 1
Distance between Duplicate supergrid clusters in x= 17.675 (mm)
- Distance between Duplicate supergrid clusters in Y= 4.500 (mm)
No. of Full plates= 0
No. of Dips in the Last plate= 64
Total No. of Spots in a Grid= 48
Sample picking Direction= Top-down, Left-right
SubDips Exist= 0
SubDip Rows= 1
SubDip Columns= 1
Total SUbDips= 1
[Blotting]
Use blots= No
Blot slides Blot Distance= 450 (micron)
All Blotting slides are sufficient for= 11.666667 (plates)
[washing]
wash selection= Different samples
Pre-wash Step1= 2
Pre-wash Step1 Time= 2.500 (s)
Pre-wash step2= 1
Pre-wash Step2 Time= 2.000 (s)
Pre-wash Step3= 0
Pre-wash Step3 Time= 0.000 (s)
Main-wash cycles= 5
Main-wash Step1= 3
Main-wash Step1 Time= 3.000 (s)
Main-wash Step2= 1
Main-wash Step2 Time= 0.500 (s)
Main-wash step3= 0
Main-wash Step3 Time= 0.000 (s)
Post-wash Step1= 3
Post-wash Step1 Time= 3.000 (s)
Post-wash Step2= 2
post-wash Step2 Time= 5.000 (s)
Post-wash step3= 1
post-wash step3 Time= 0.500 (s)
[options]
Z-Down offset in sourceplate = 0.000 (mm)
Source plate Approach speed= 20.000 (mm/s)
Source plate Withdraw speed= 15.000 (mm/s)
Source plate Dwell Time = 1000.000 (ms)
oscillation in water-bath1 = Yes
oscillation in Water-bath2 = Yes
Water-bath1 Oscillation Distance in x= 4.000 (mm)
water-bath2 Oscillation Distance in x= 1.500 (mm)
water-bath1 Number of oscillations in Bath= 3
water-bath2 Number of oscillations in Bath= 3
Z-Down offset on slides = 0.000 (mm)
Slide/Membrane/Blot Approach speed= 10.000 (mm/s)
Dwell Time for printing= 25.000 (ms)
Number of substrates between Redips = 0
Number of Redips per sample = 1
 
Description Spotted antigens (protein, peptide, DNA … )
 
Submission date Sep 26, 2008
Last update date Dec 01, 2008
Contact name József Prechl
E-mail(s) jprechl@iif.hu
Phone +3613812175
Fax +3613812176
URL http://www.abc-arrays.com
Organization name ELTE-MTA
Department Immunology Research Group
Lab Immunoproteomics
Street address Pázmány Péter s. 1/C
City Budapest
ZIP/Postal code 1117
Country Hungary
 
Samples (120) GSM324586, GSM324587, GSM324588, GSM324589, GSM324590, GSM324591 
Series (1)
GSE12943 Profiling antibody function on antigen arrays

Data table header descriptions
ID
Column Position on the array (column)
Row Position on the array (row)
SPOT_ID Name of printed material
Dilution factor Dilution factor of printed antigen
Supplier Company that delivered the material
Cat.No. Catalogue Number
PT_LIST Uniprot entry

Data table
ID Column Row SPOT_ID Dilution factor Supplier Cat.No. PT_LIST
1 1 1 RNP/Sm antigen, calf thymus 1 Arotec Diagnostics Limited ATR01-02
2 1 2 pANCA, human neutrophil 1 Arotec Diagnostics Limited ATM01-02 P05164
3 1 3 Lactoferrin (human neutrophil) 1 Arotec Diagnostics Limited ATL02-02 P02788
4 1 4 Jo-1 antigen, calf thymus 1 Arotec Diagnostics Limited ATJ01-02 Q3T0B1
5 1 5 Ro (SSA) antigen, calf thymus 1 Arotec Diagnostics Limited ATR02-02
6 1 6 La (SSB) antigen, calf thymus 1 Arotec Diagnostics Limited ATL01-02 P10881
7 1 7 BPI antigen, human neutrophil 1 Arotec Diagnostics Limited ATB01-02
8 1 8 biot-cit-15-cit (citrullinated fillagrin) 1
9 1 9 RNP/Sm antigen, calf thymus 25 Arotec Diagnostics Limited ATR01-02
10 1 10 pANCA, human neutrophil 25 Arotec Diagnostics Limited ATM01-02 P05164
11 1 11 Lactoferrin (human neutrophil) 25 Arotec Diagnostics Limited ATL02-02 P02788
12 1 12 Jo-1 antigen, calf thymus 25 Arotec Diagnostics Limited ATJ01-02 Q3T0B1
13 1 13 Ro (SSA) antigen, calf thymus 25 Arotec Diagnostics Limited ATR02-02
14 1 14 La (SSB) antigen, calf thymus 25 Arotec Diagnostics Limited ATL01-02 P10881
15 1 15 BPI antigen, human neutrophil 25 Arotec Diagnostics Limited ATB01-02
16 1 16 biot-cit-15-cit (citrullinated fillagrin) 25
17 1 17 BP28 25 Diagnosticum Ldt Q9UMD9
18 1 18 NKDA-BSA 25 Diagnosticum Ldt P23229
19 1 19 BP180-BSA 25 Diagnosticum Ldt Q9UMD9
20 1 20 HDL 25 SCIPAC P233-8

Total number of rows: 960

Table truncated, full table size 44 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap