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Platform GPL7442 Query DataSets for GPL7442
Status Public on Nov 17, 2009
Title Agilent-015435 Copy_of_Mouse Promoter ChIP-on-Chip Set 244K Microarray 1 of 2
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Mouse Promoter ChIP-on-Chip Set 244K, Microarray 1 of 2

Arrays of this design have barcodes that begin with 16015435 or 2515435.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Oct 08, 2008
Last update date Jan 17, 2013
Contact name Frederic Emile Bienvenu
E-mail(s) frederic_bienvenu@dfci.harvard.edu
Phone 617 632 3638
Fax 617 632 5006
Organization name Dana-Farber Cancer Institute
Department Cancer Biology
Lab Sicinski
Street address 1 Jimmy Fund Way
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (1) GSM343372
Series (2)
GSE13632 Flag Chromatin IP in Cyclin D1 Flag-HA tagged E.14.5 embryos versus Flag Chromatin IP in wildtype E.14.5 embryos
GSE13636 Analyses of cyclin D1 function using a "genetic-proteomic" approach

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBank Accession number
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
GB_RANGE
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING GB_RANGE CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION
1 267 912 MmCGHBrightCorner pos
2 267 910 DarkCorner pos
3 267 908 DarkCorner pos
4 267 906 A_68_P25609690 FALSE NM_010202 Fgf4 fibroblast growth factor 4 ref|NM_010202:598 NC_000073.3[152047867..152047911] chr7:152047867-152047911 mm|qF5 INSIDE
5 267 904 A_68_P26339686 FALSE NM_207145 Olfr845 olfactory receptor 845 ref|NM_207145:594 NC_000075.3[19143470..19143529] chr9:19143470-19143529 mm|qA2 INSIDE
6 267 902 A_68_P23527853 FALSE NM_011188 Psmc2 proteasome (prosome, macropain) 26S subunit, ATPase 2 ref|NM_011188:2959 NC_000071.3[21294035..21294084] chr5:21294035-21294084 mm|qA3 INSIDE
7 267 900 A_68_P22696176 FALSE NM_001002927 Penk1 preproenkephalin 1 ref|NM_001002927:-4524 NC_000070.3[4070087..4070146] chr4:4070087-4070146 mm|qA1 PROMOTER
8 267 898 A_68_P26214855 FALSE NM_026648 Lrrc50 leucine rich repeat containing 50 ref|NM_026648:3999 NC_000074.3[122103107..122103160] chr8:122103107-122103160 mm|qE1 INSIDE
9 267 896 A_68_P26030219 FALSE NM_172912 Abcc12 ATP-binding cassette, sub-family C (CFTR/MRP), member 12 ref|NM_172912:-16 NC_000074.3[89090483..89090528] chr8:89090483-89090528 mm|qC3 PROMOTER
10 267 894 A_68_P22785996 FALSE NM_199467 F730047E07Rik RIKEN cDNA F730047E07 gene ref|NM_199467:-1046 NC_000070.3[24431233..24431291] chr4:24431233-24431291 mm|qA3 PROMOTER
11 267 892 A_68_P20346955 FALSE NM_001034060 Rufy4 RUN and FYVE domain containing 4 ref|NM_001034060:-290 NC_000067.3[74171801..74171849] chr1:74171801-74171849 mm|qC3 PROMOTER
12 267 890 A_68_P24882357 FALSE NM_019946 Mgst1 microsomal glutathione S-transferase 1 ref|NM_019946:272 NC_000072.3[138089300..138089359] chr6:138089300-138089359 mm|qG1 INSIDE
13 267 888 A_68_P25662407 FALSE NM_024279 1700094C09Rik RIKEN cDNA 1700094C09 gene ref|NM_024279:-4306 NC_000074.3[12568713..12568772] chr8:12568713-12568772 mm|qA1.1 PROMOTER
14 267 886 A_68_P22889913 FALSE NM_198664 Tbc1d2 TBC1 domain family, member 2 ref|NM_198664:-2455 NC_000070.3[46665497..46665556] chr4:46665497-46665556 mm|qB1 PROMOTER
15 267 884 A_68_P25464319 FALSE NM_146197 Acsm2 acyl-CoA synthetase medium-chain family member 2 ref|NM_146197:-255 NC_000073.3[126704940..126704999] chr7:126704940-126704999 mm|qF2 PROMOTER
16 267 882 A_68_P20937921 FALSE NM_144880 Ppp2r5a protein phosphatase 2, regulatory subunit B (B56), alpha isoform ref|NM_144880:-5399 NC_000067.3[193226290..193226349] chr1:193226290-193226349 mm|qH6 PROMOTER
17 267 880 A_68_P24691305 FALSE NM_019743 Rybp RING1 and YY1 binding protein ref|NM_019743:-1886 NC_000072.3[100239213..100239264] chr6:100239213-100239264 mm|qD3 PROMOTER
18 267 878 A_68_P25264326 FALSE NM_175433 Zfp710 zinc finger protein 710 ref|NM_175433:-1587 NC_000073.3[87169610..87169654] chr7:87169610-87169654 mm|qD3 PROMOTER
19 267 876 A_68_P24144294 FALSE NM_175362 Card11 caspase recruitment domain family, member 11 ref|NM_175362:899 NC_000071.3[141475622..141475681] chr5:141475622-141475681 mm|qG2 INSIDE
20 267 874 A_68_P26169438 FALSE NM_001037665 Zfp1 zinc finger protein 1 ref|NM_001037665:1182 NC_000074.3[114168495..114168554] chr8:114168495-114168554 mm|qE1 INSIDE

Total number of rows: 243504

Table truncated, full table size 43272 Kbytes.




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