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Platform GPL7443 Query DataSets for GPL7443
Status Public on Nov 17, 2009
Title Agilent-015436 Copy_of_Mouse Promoter ChIP-on-Chip Set 244K Microarray 2 of 2
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Mouse Promoter ChIP-on-Chip Set 244K, Microarray 2 of 2

Arrays of this design have barcodes that begin with 16015436 or 2515436.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Oct 08, 2008
Last update date Jan 17, 2013
Contact name Frederic Emile Bienvenu
E-mail(s) frederic_bienvenu@dfci.harvard.edu
Phone 617 632 3638
Fax 617 632 5006
Organization name Dana-Farber Cancer Institute
Department Cancer Biology
Lab Sicinski
Street address 1 Jimmy Fund Way
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (1) GSM343373
Series (2)
GSE13632 Flag Chromatin IP in Cyclin D1 Flag-HA tagged E.14.5 embryos versus Flag Chromatin IP in wildtype E.14.5 embryos
GSE13636 Analyses of cyclin D1 function using a "genetic-proteomic" approach

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBank Accession number
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
GB_RANGE
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING GB_RANGE CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION
1 267 912 MmCGHBrightCorner pos
2 267 910 DarkCorner pos
3 267 908 DarkCorner pos
4 267 906 A_68_P30392974 FALSE NM_054088 Pnpla3 patatin-like phospholipase domain containing 3 ref|NM_054088:-5116 NC_000081.3[83993100..83993159] chr15:83993100-83993159 mm|qE2 PROMOTER
5 267 904 A_68_P31166482 FALSE NM_029602 1700022C21Rik RIKEN cDNA 1700022C21 gene ref|NM_029602:103|ref|NM_029632:-6905 NC_000083.3[37095614..37095665] chr17:37095614-37095665 mm|qB1 INSIDE
6 267 902 A_68_P26584988 FALSE NM_001077631 2010321M09Rik RIKEN cDNA 2010321M09 gene ref|NM_001077631:-1204|ref|NM_144813:-8020 NC_000075.3[64807405..64807464] chr9:64807405-64807464 mm|qC DIVERGENT_PROMOTER
7 267 900 A_68_P30345948 FALSE NM_133691 Puf60 poly-U binding splicing factor 60 ref|NM_133691:47|ref|NM_144847:9151 NC_000081.3[75911270..75911314] chr15:75911270-75911314 mm|qD3 INSIDE
8 267 898 A_68_P30724837 FALSE NM_026439 Ccdc80 coiled-coil domain containing 80 ref|NM_026439:1231 NC_000082.3[45095374..45095420] chr16:45095374-45095420 mm|qB5 INSIDE
9 267 896 A_68_P29482750 FALSE NM_007479 Arf4 ADP-ribosylation factor 4 ref|NM_007479:-2796|ref|NM_145969:55840 NC_000080.3[27454857..27454916] chr14:27454857-27454916 mm|qA3 PROMOTER
10 267 894 A_68_P27189076 FALSE NM_026085 3110049J23Rik RIKEN cDNA 3110049J23 gene ref|NM_026085:13392 NC_000076.3[62500624..62500679] chr10:62500624-62500679 mm|qB4 INSIDE
11 267 892 A_68_P30387874 FALSE NM_025445 Arfgap3 ADP-ribosylation factor GTPase activating protein 3 ref|NM_025445:-5391 NC_000081.3[83186043..83186093] chr15:83186043-83186093 mm|qE1 PROMOTER
12 267 890 A_68_P28908990 FALSE NM_009238 Sox4 SRY-box containing gene 4 ref|NM_009238:-1327 NC_000079.3[29046851..29046905] chr13:29046851-29046905 mm|qA3.1 PROMOTER
13 267 888 A_68_P26822080 FALSE NM_009211 Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 ref|NM_009211:-2279 NC_000075.3[110032219..110032278] chr9:110032219-110032278 mm|qF2 PROMOTER
14 267 886 A_68_P31161470 FALSE NM_026987 Dhx16 DEAH (Asp-Glu-Ala-His) box polypeptide 16 ref|NM_026987:1541 NC_000083.3[36018279..36018329] chr17:36018279-36018329 mm|qB1 INSIDE
15 267 884 A_68_P32563403 FALSE NM_172932 Nlgn3 neuroligin 3 ref|NM_172932:1390|ref|NM_021521:26509 NC_000086.4[98495916..98495960] chrX:98495916-98495960 mm|qD INSIDE
16 267 882 A_68_P30113955 FALSE NM_027496 5730557B15Rik RIKEN cDNA 5730557B15 gene ref|NM_027496:-2730 NC_000081.3[31300021..31300080] chr15:31300021-31300080 mm|qB2 PROMOTER
17 267 880 A_68_P30580618 FALSE NM_011532 Tbx1 T-box 1 ref|NM_011532:-1960 NC_000082.3[18589000..18589044] chr16:18589000-18589044 mm|qA3 PROMOTER
18 267 878 A_68_P32567835 FALSE NM_007709 Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 ref|NM_007709:-3598 NC_000086.4[99450677..99450736] chrX:99450677-99450736 mm|qD PROMOTER
19 267 876 A_68_P32103874 FALSE NM_145952 Tbc1d12 TBC1D12: TBC1 domain family, member 12 ref|NM_145952:2373 NC_000085.3[38913412..38913471] chr19:38913412-38913471 mm|qC3 INSIDE
20 267 874 A_68_P27898133 FALSE NM_009204 Slc2a4 solute carrier family 2 (facilitated glucose transporter), member 4 ref|NM_009204:-1068|ref|NM_016875:13360 NC_000077.3[69762734..69762788] chr11:69762734-69762788 mm|qB3 PROMOTER

Total number of rows: 243504

Table truncated, full table size 43316 Kbytes.




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