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Status
Public on Sep 09, 2009
Title
Max Planck Institute, Whole Genome Array for Rhodopirellula baltica SH1T 7.4K version 1
Technology type
spotted oligonucleotide
Distribution
custom-commercial
Organism
Rhodopirellula baltica SH 1 Manufacturer
Microbial Genomics Group, Max Planck Institute for Marine Microbiology
Manufacture protocol
70mer oligos designed and synthesized by operon (www.operon.com)
Support
glass
Coating
aminosilane
Description
Strain: Rhodopirellula baltica SH 1T
Web link
http://www.megx.net Contributor(s)
Wecker P , Ellrott A , Klockow C , Glöckner FO , Würdemann CA Submission date
Nov 18, 2008
Last update date
Sep 09, 2009
Contact name
Patricia Wecker
E-mail(s)
pwecker@mpi-bremen.de Phone
00494212028982
Organization name
Max Planck Institut for Marine Microbiology
Department
Molecular Ecology
Lab
Microbial Genomics Group
Street address
Celsiusstr, 1
City
Bremen
ZIP/Postal code
28359
Country
Germany
Samples (72)
GSM344712 , GSM344713 , GSM344717 , GSM344719 , GSM344720 , GSM344721
GSM346655 ,
GSM346661 ,
GSM346665 ,
GSM346666 ,
GSM346667 ,
GSM346668 ,
GSM346669 ,
GSM346678 ,
GSM346679 ,
GSM346680 ,
GSM346682 ,
GSM346683 ,
GSM348233 ,
GSM348234 ,
GSM348238 ,
GSM348243 ,
GSM348245 ,
GSM348246 ,
GSM348247 ,
GSM348248 ,
GSM348249 ,
GSM348250 ,
GSM348264 ,
GSM348271 ,
GSM348272 ,
GSM348273 ,
GSM348282 ,
GSM348283 ,
GSM348284 ,
GSM348285 ,
GSM353150 ,
GSM353151 ,
GSM353152 ,
GSM353153 ,
GSM353154 ,
GSM353155 ,
GSM353156 ,
GSM353157 ,
GSM353158 ,
GSM353159 ,
GSM353160 ,
GSM353161 ,
GSM353162 ,
GSM353163 ,
GSM353164 ,
GSM353165 ,
GSM353166 ,
GSM353167 ,
GSM482099 ,
GSM482100 ,
GSM482101 ,
GSM482102 ,
GSM482103 ,
GSM482104 ,
GSM482105 ,
GSM482106 ,
GSM875832 ,
GSM875833 ,
GSM875834 ,
GSM875835 ,
GSM875836 ,
GSM875837 ,
GSM875838 ,
GSM875839 ,
GSM875840 ,
GSM875841 Series (5)
GSE13769 Response of Rhodopirellula baltica to heat shock
GSE13856 Response of Rhodopirellula baltica to cold shock
GSE14075 Response of Rhodopirellula baltica to salt shift
GSE19405 Life cycle analysis of the model organism Rhodopirellula baltica by transcritpome studies
GSE35832 Combining transcriptomics with functional phylogenomics elucidates the ecophysiology of sulfatases in marine bacteria
Data table header descriptions ID Oligo ID unique ID given by Operon
SEQUENCE 70mer oligos
Annotation ORF locus tags
SPOT_ID
Data table ID Oligo ID SEQUENCE Annotation ORF SPOT_ID RB100
BX119912_56
CGCGCCTTGGTTCCTGCACTTCACCGTTGCGTGGTGGGCCGCATTCTTGGCCATGTTGGCCTTCATGGTT
hypothetical protein-transmembrane prediction (CAD71386.1, RB100)
RB100 RB10002
BX119912_5570
CTGAAGGCTGAAATCGTCGAAGGAATGGAATCGACCTATGTCAGCACCTCACAAACATCCATGACGGAAT
glucose dehydrogenase Gcd (gcd, CAD76570.1, RB10002)
RB10002 RB10004
BX119912_5571
CGACGGATTACTACCCCGAAGATTGCCCGACCGAAGTGGAAACGCTTTGGCCAGCCGAGCGCGTCAACGA
phosphoglycerate dehydrogenase SerA2-putative NAD-dependent 2-hydroxyacid dehydrogenase (serA, CAD76571.1, RB10004)
RB10004 RB10005
BX119912_5572
TTGTGGAAGAATTCAACCGCACCTATCGATCCATCAATTTGTCGATCACGGTTCGACCACCCGATCCGAA
hypothetical protein (CAD76572.1, RB10005)
RB10005 RB10006
BX119912_5573
CAAATGCGAGCCAACCCGCGAGTTTCGCTGTGTTTGTTCTGGCCACACTGCCAACGCCAGGTCCGCATCC
putative pyridoxamine oxidase (pdxH, CAD76573.1, RB10006)
RB10006 RB10007
BX119912_5574
CGGGTGTTCCCTCGGTCGTGATTTCGGGCGACCAGAAAGACCAACTGGCACAGCAACTCCTTTCAGGAAA
conserved hypothetical protein (CAD76574.1, RB10007)
RB10007 RB10009
BX119912_5575
GGACGATTTCCGCGAAGACGTCTTCTTCCACTTCAAAGCGTGGGAAGCCTACAACGGCGAGACATTCGAC
similar to cold shock-like protein cspI (cpsG, CAD76575.1, RB10009)
RB10009 RB10010
BX119912_5576
TTCTTGTATTTCCAAACATCAACGACGGAAGACGGACAGCTTTCGGATCATGCGTTGGCGGAACGTTTGT
hypothetical protein-signal peptide and transmembrane prediction (CAD76576.1, RB10010)
RB10010 RB10014
BX119912_5577
TCGAAACTGGATCGATGTTCCCAAACCCGAAGCTCCGTTTGATTCCCCGAAGAATCGCAATCTCGTCGAA
hypothetical protein (CAD76577.1, RB10014)
RB10014 RB10018
BX119912_5578
ACGCTGTGCGATCGGAAGTTGACGCGAATCATTAACGATGAATCTCAACTCGAAATTCAACGTTTCGTCA
hypothetical protein (CAD76578.1, RB10018)
RB10018 RB10019
BX119912_5579
GCAATTCCTGCCCGACATCGACTGACGAAGTACAGAATCAGTCAGGATTT
hypothetical protein (CAD76579.1, RB10019)
RB10019 RB1002
BX119912_539
CGAGCCAACATGATTTTGGTGATGTTTCAGTTTGGGCCATCAATCCAAAACGTGACGGAGTGGTGCCGAC
hypothetical protein-transmembrane prediction (CAD71862.1, RB1002)
RB1002 RB10020
BX119912_5580
TAGAAATAGTCTACCAGATACGATTTTTGGCATGCCGGAAGAGCGGCCAGGCAAGCTGACTCTCCGGTGG
hypothetical protein-transmembrane prediction (CAD76580.1, RB10020)
RB10020 RB10021
BX119912_5581
CCTCTTGTGCCTCCATCGATCGCAATTCGTTCGCCGGCACGATCGATCTTTCGCTATCCACACACTTTCG
hypothetical protein (CAD76581.1, RB10021)
RB10021 RB10022
BX119912_5582
CAGAGTTTGAGCGCATCGCGGTGGTCTCTGATTTCATTGCCGCCTACACGCCGATTGTATTGATCGTGGT
hypothetical protein-transmembrane prediction (CAD76582.1, RB10022)
RB10022 RB10023
BX119912_5583
CTCCAACTATCATCACGACTATGATTCGCGGCGAGGATGAAAGGGGTAATCTATCTGAGTCCTTCATGTT
hypothetical protein (CAD76583.1, RB10023)
RB10023 RB10024
BX119912_5584
TTGCTGTGTCGCCCTTCGGGCTATGTCGAGCCGAACGATGGCAACCGACGATCCAGTAGCAAGAATGCTA
hypothetical protein (CAD76584.1, RB10024)
RB10024 RB10025
BX119912_5585
ATCGATCTTGGACGCGGTGTTGCAACTGACCAAACACATCCACAATGACTTTCAGTACGATTCCACCGCC
conserved hypothetical protein-putative protease (CAD76585.1, RB10025)
RB10025 RB10026
BX119912_5586
TCAACCGTTTGATCACTCACTTGATGGCGTTCAGTGGATTGACCGCGGAGAGCCTGACAAGAACACATGG
conserved hypothetical protein (CAD76586.1, RB10026)
RB10026 RB10027
BX119912_5587
AGTTCAACCGGACGTTTGGGGTTAGTCGAACTGCGTGGCTTTGAAATGCCACCCCACGAACAAATGAGTC
conserved hypothetical protein-putative protease (CAD76587.1, RB10027)
RB10027
7745 1174 Kbytes .Supplementary data files not provided
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