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Platform GPL7741 Query DataSets for GPL7741
Status Public on Dec 05, 2009
Title EJH Hducreyi Oligo DNA Microarray 1
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism [Haemophilus] ducreyi 35000HP
Manufacturer Microarrays Inc.
Manufacture protocol 1. Array robot type: MI's robot is a custom design and is not commercially available
2. Printing Type: Contact printing
3. Deposition Methodology: MI uses ceramic capillary printing pins.
4. Buffer type: 150mM NaPO4, pH 8.0,
5. DNA concentration: 40umolar
6. Substrate type: Corning UltraGAPS
Support glass
 
 
Contributor(s) Labandeira-Rey M, Hansen EJ
Submission date Dec 05, 2008
Last update date Dec 05, 2009
Contact name Eric J Hansen
E-mail(s) eric.hansen@utsouthwestern.edu
Phone 2146331386
Organization name University of Texas Southwestern Medical Center
Department Microbiology
Lab Eric J. Hansen
Street address 5323 Harry Hines Blvd
City Dallas
State/province TX
ZIP/Postal code 75390-9048
Country USA
 
Samples (28) GSM348197, GSM348198, GSM348219, GSM348220, GSM542688, GSM542689 
Series (5)
GSE13851 H. ducreyi 35000HP grown in the presence or absence of FCS
GSE21788 Haemophilus ducreyi 35000HPcpxA gene expression relative to 35000HP
GSE21789 Global gene expression profile of Haemophilus ducreyi 35000HPcpxRpML125 relative to 35000HPcpxRpLS88

Data table header descriptions
ID
ORF H. ducreyi open reading frame designation
Annotation Top BLAST annotation
SEQUENCE Sequence of oligonucleotide used to spot on array
SPOT_ID

Data table
ID ORF Annotation SEQUENCE SPOT_ID
1:01:01 HD0353 putative protease TACTTTTGTACTTGGTATCGTATTGAATATTATTTTTCAAGTGACAGGTATTAAAGGCACAAGTACGACC
1:02:01 HD0354 glutathione reductase CAAAACAAGTCGTTAAAAATGCAGATGGATCTTTAACGCTCACGTTACAAGATGGGCGTCAGACTGAAGT
1:03:01 HD0356 putative deoxyribonuclease TTATTTTTCGACACTCATACCCATTTAGACTATTTAGCGGATCAACTTGAGCTTCCCTTTAGTCAACTTA
1:04:01 HD0357 probable carbon starvation protein A TTATATGGTCCTGTTGCAATGCTTTGGATTGTTCTAGGTTGTATCTTCGCAGGTGCAGTACATGATTATT
1:05:01 HD0358 conserved hypothetical protein TTGTCTCAGAAATCACCTTGCACGAAGTTCGCAATGCGGTCGAAAATGCCAATCGAGTATTAACAACGCG
1:06:01 HD0359 hypothetical protein TGAAAAACTACCGCTTCTGGGGAAGGTTACTCACTAACCCAATAGTTCAAGCACAGGCTAAAATTGTGGT
1:07:01 HD0360 AphA (smp-like) protein CTTACTCAGCAAAATCTAATAGGTTTTTTGCGTGTTACGTTTGATTCACAATACGGTCAGACCACGCAAA
1:08:01 HD0361 translation initiation factor IF-1 CCAAACACGATGTTCCGTGTTGAGTTGGAGAATGGCCACATAGTGGCAGCGCATATTTCTGGTAAAATGC
1:09:01 HD0362 conserved hypothetical protein TACCGGTTAGCGTGACTAATCGAGGAAAAACATTTAGCAACCAAATGCTATTTACTCATCGAGGTTTATC
1:10:01 HD0363 putative aspartate-semialdehyde dehydrogenase CATTGGCATTAAAACCATTCCTCAATCAACCTATTAGCCATGTTTTAGTCAGTTCATTACTCCCTGCCGC
1:11:01 HD0364 conserved possible transcription regulator CTTATCAACTTCATCCTTATCCACACGATCCGCAAAATCATAATTTTGGACAAGAAGCGGTCGAAAAATT
1:12:01 HD0365 conserved hypothetical protein AAGACGCAGATTGTATAACTTTAGATTTGTTCGCAAGCATGCCAAAAGTTGGGCGACCACGCACTAATCC
1:13:01 HD0379 Na+translocating NADH-ubiquinone oxidoreductase, subunit A GATTACAATTAAAAAAGGCTTGGATTTACCTATTGCAGCTTCGCCAGCACAAGTAATCCATAACGGCAAT
1:14:01 HD0380 NADH dehydrogenase CCACATATACTATTCTTTATACACCGGGTACAGTGACTAAAAAAGACTCGCATGTACGTGATGCGTTAGA
1:15:01 HD0381 Na+translocating NADH-ubiquinone oxidoreductase, subunit C GTAATGGTTTATGGTCTATGATGTATGGTTTTGTGGCGGTACAACCTGATGCGAATACGGTGAATGGTAT
1:16:01 HD0382 Na+translocating NADH-ubiquinone oxidoreductase, subunit D TGTATCGTTATGGGACGTGCAGAAGCATTTGCAATGAAATCAGCTCCGCTTGAAAGTTTTGTAGATGGTA
1:01:02 HD0383 Na+translocating NADH-ubiquinone oxidoreductase, subunit E GAAATGATTTTAGACAAGTTCTTCCCTGCGCTTTACAGTGCACTAGGGATTTTCTTACCGCTTATTACAG
1:02:02 HD0384 Na+translocating NADH-ubiquinone oxidoreductase, subunit F ATGGCGCTATGTTTCAAAAGTCGATGAGCATATTATTCGTGCTTACTCAATGGCATCCTATCCAGAAGAA
1:03:02 HD0386 thiamine biosynthesis lipoprotein ATGGGCACCACTTATACAGTCAAATATATTGATGATGGTAAGATCGCTAATTTACCTACCGCTGAACAAG
1:04:02 HD0387 conserved hypothetical protein TTGTGGTGGTATTACGGCATTAGGTATGAAAAAAATGTGCGATTGTGAAGAGCCTTGCGATAATTTGAAA

Total number of rows: 5760

Table truncated, full table size 609 Kbytes.




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