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Platform GPL7746 Query DataSets for GPL7746
Status Public on Aug 01, 2009
Title OvHV-2 Agilent custom 10K microarray
Technology type in situ oligonucleotide
Distribution custom-commercial
Organisms Bos taurus; Ovine gammaherpesvirus 2
Manufacturer Agilent
Manufacture protocol See manufacturer's web site.
 
Description Agilent-013758
 
Submission date Dec 05, 2008
Last update date Aug 01, 2009
Contact name Hubert Rehrauer
E-mail(s) Hubert.Rehrauer@fgcz.ethz.ch
Organization name ETH Zurich / University of Zurich
Department FGCZ
Street address Winterthurerstr. 190
City Zurich
ZIP/Postal code 8057
Country Switzerland
 
Samples (4) GSM348260, GSM348261, GSM348262, GSM348263
Series (2)
GSE13853 Expression profiling of Ovine Herpesvirus 2-infected lymph nodes from Bos taurus
GSE13854 Expression profiling of the host and the Ovine Herpesvirus 2 pathogen during malignant catarrhal fever of cattle

Data table header descriptions
ID
Genomic Position Genomic positions of perfect matches of the 60mer probes on the OvHV-2 virus genomic sequence (NC_007646.1)
OvHV2 Accession For OvHV-2 ORF-targeting probes, the NCBI Protein accession
OvHV2 ID For OvHV-2 ORF-targeting probes, the NCBI Protein ID
GB_ACC GenBank accession for the Bos taurus-targeting probes
RANGE_GB RefSeq accession of OvHV-2 genome (NC_007646.1)
RANGE_START Start position of oligonucleotide on NC_007646.1
RANGE_END End position of oligonucleotide on NC_007646.1
RANGE_STRAND Strand of NC_007646.1 represented by oligonucleotide
PT_ACC OvHV-2 protein accession

Data table
ID Genomic Position OvHV2 Accession OvHV2 ID GB_ACC RANGE_GB RANGE_START RANGE_END RANGE_STRAND PT_ACC
d2756 (+):38354-38413 NC_007646.1 38354 38413 +
d8618 YP_438186.1 83642898 YP_438186.1
d8099 (-):26097-26156 NC_007646.1 26097 26156 -
d7762 (-):46317-46376 NC_007646.1 46317 46376 -
d10034 CK776130.1
d8056 (-):28677-28736 NC_007646.1 28677 28736 -
d1685 (+):101864-101923 NC_007646.1 101864 101923 +
d1405 (+):85064-85123 NC_007646.1 85064 85123 +
d2021 (+):122024-122083 NC_007646.1 122024 122083 +
d42 (+):3284-3343 NC_007646.1 3284 3343 +
d9518 CK846627.1
d8418 (-):6957-7016 NC_007646.1 6957 7016 -
d6551 (-):118977-119036 NC_007646.1 118977 119036 -
d3636 (+):91154-91213 NC_007646.1 91154 91213 +
d6642 (-):113517-113576 NC_007646.1 113517 113576 -
d2416 (+):17954-18013 NC_007646.1 17954 18013 +
d6788 (-):104757-104816 NC_007646.1 104757 104816 -
d2852 (+):44114-44173 NC_007646.1 44114 44173 +
d2514 (+):23834-23893 NC_007646.1 23834 23893 +
d1449 (+):87704-87763 NC_007646.1 87704 87763 +

Total number of rows: 9807

Table truncated, full table size 472 Kbytes.




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