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Platform GPL7787 Query DataSets for GPL7787
Status Public on Jan 13, 2009
Title Agilent_Dm_5.1_470_tiling
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Drosophila melanogaster
Manufacturer Agilent Technologies
Manufacture protocol Agilent Technologies
Catalog number AMADID# 016635
Support glass
Coating unknown
 
Description CGH resolution tiling array for modENCODE. Average probe spacing of 470 bp for Drosophila genome (5.1) and unique heterochromatin scaffolds.
 
Web link http://www.modencode.org
Contributor(s) MacAlpine DM
Submission date Dec 11, 2008
Last update date Jan 13, 2009
Contact name David M MacAlpine
E-mail(s) david.macalpine@duke.edu
Phone 919 681 6077
Organization name Duke University Medical Center
Department Pharmacology and Cancer Biology
Street address Box 3813 DUMC
City Durham
State/province NC
ZIP/Postal code 27714
Country USA
 
Samples (31) GSM432694, GSM432695, GSM432696, GSM432697, GSM432698, GSM432699 
Series (16)
GSE17279 Kc167 Replication Timing
GSE17280 S2-DSRC Replication Timing
GSE17281 ML-DmBG3-c2 Replication Timing

Data table header descriptions
ID
FEATURE Unique local identifier for probe sequence
CHROMOSOME Chromosome
GB_RANGE RefSeq assembly [start..end]
START Genomic coordinate for start of probe sequence
END Genomic coordinate for end of probe sequence (+1 nt)
SEQUENCE Oligo sequence
GENOME_SOURCE Genome source from which probes were designed
SPOT_ID

Data table
ID FEATURE CHROMOSOME GB_RANGE START END SEQUENCE GENOME_SOURCE SPOT_ID
1 DarkCorner agilent_control control
2 DarkCorner agilent_control control
3 DarkCorner agilent_control control
4 DM_DMEL_06286696 chr3L AE014296.4[15051281..15051340] 15051281 15051341 ATTTCATACCTTTAATTGTGCATACGAAAGTGGCAACTCTAAAAGTTGCGAAATCCAATA flybase|dmel5.1
5 DM_DMEL_06544726 chr3L AE014296.4[17631581..17631628] 17631581 17631629 ATTACGAATTCCTTCGACGTCTACTTAGTAGCGATTGTAGCGACCGCG flybase|dmel5.1
6 DM_DMEL_13228238 chrX AE014298.4[15544531..15544587] 15544531 15544588 TAGGGAATTTTCATTCACGCGTTGCAAATAGTTGAGTAATCAAAATTGGAGTAATGG flybase|dmel5.1
7 DM_DMEL_13664061 chrX AE014298.4[19902761..19902805] 19902761 19902806 GAGGCATTATGTTTTTATCCGTGCACGAACTTCTACTACGCCCCC flybase|dmel5.1
8 DM_DMEL_09776059 chr3R AE014297.2[22845971..22846024] 22845971 22846025 AATGTATTTTATTCAGAGAACATGGTTCTACTCAATCTTGCCGAAGGGTGCCTC flybase|dmel5.1
9 DM_DMEL_06891136 chr3L AE014296.4[21095681..21095728] 21095681 21095729 TCCTCATTTGGTTCGATCTTAAATGAAATGCCTGGCACATTTTTTACG flybase|dmel5.1
10 DM_DMEL_01904395 chr2L AE014134.5[19043941..19043989] 19043941 19043990 CGTACGCCACACTGATGTTATTTAGGATGGTTACAGAGGCGTCGTTAAC flybase|dmel5.1
11 DM_DMEL_12904307 chrX AE014298.4[12305221..12305280] 12305221 12305281 GGTATGGGATGAGGGAAAGGCAGCAAAATGTTAGCATTGAATATTAGAGCAACATTTATA flybase|dmel5.1
12 DM_DMEL_01034951 chr2L AE014134.5[10349501..10349558] 10349501 10349559 AAAGAAATAAGCAATATTTTAAGGATTATCCGAAGGATTCACTGCCGGCAATCACTCT flybase|dmel5.1
13 DM_DMEL_05521652 chr3L AE014296.4[7400841..7400893] 7400841 7400894 AGCTAAACCTGCTGGCAAAAATGCGTTCCACTTTTGCTTTTTTGTATTTGTAC flybase|dmel5.1
14 DM_DMEL_12591134 chrX AE014298.4[9173491..9173535] 9173491 9173536 GCGCTTTTCGTAGTCCGCATGCTTAACGTGCTTGTCCAATCTTTC flybase|dmel5.1
15 DM_DMEL_11172500 chrU FA000001.1[5036131..5036175] 5036131 5036176 CGGGAAACAATTTGTTGGCATCTGCCCTGGTGACGCCCTTGGTTT flybase|dmel5.1
16 DM_DMEL_00733552 chr2L AE014134.5[7335511..7335567] 7335511 7335568 GAATCATCTACAATAGTTTAGTCTTAGGCTAACAAAGTCGCTCCGATTTGGCCCGTT flybase|dmel5.1
17 DM_DMEL_06275981 chr3L AE014296.4[14944131..14944190] 14944131 14944191 AAAAGATTAATCCACGCGATCCGATTTAATGAGTCGCATTCTTCATAAAACATTTTACAA flybase|dmel5.1
18 DM_DMEL_11840978 chrX AE014298.4[1671931..1671979] 1671931 1671980 ATGCGAGTAGCTCGATCCTCATTTGGTTACCAACGTCAACAGTTTTATG flybase|dmel5.1
19 DM_DMEL_01608962 chr2L AE014134.5[16089611..16089659] 16089611 16089660 AATGGTTTTGAGGTGTCAATTTCTATAGTCTTGTCCATTGCCATGGCAC flybase|dmel5.1
20 DM_DMEL_13023221 chrX AE014298.4[13494361..13494407] 13494361 13494408 TAGAACAGCGAAATACAGGTGTGCAAACAAGTCAACAAATGATTGCC flybase|dmel5.1

Total number of rows: 243504

Table truncated, full table size 34570 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL7787_2516635.ndf.gz 8.4 Mb (ftp)(http) NDF
GPL7787_2516635.pos.gz 3.6 Mb (ftp)(http) POS

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