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| Status |
Public on Aug 01, 2009 |
| Title |
[Syel6301a520114F] Affymetrix Custom GeneChip Synechococcus 2515 ORFs v1.0 |
| Technology type |
in situ oligonucleotide |
| Distribution |
non-commercial |
| Organisms |
Synechococcus elongatus PCC 7942 = FACHB-805; Synechococcus elongatus PCC 6301 |
| Manufacturer |
Affymetrix |
| Manufacture protocol |
Affymetrix prokaryotic array protocol (see Affymetrix website)
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| Submission date |
Dec 29, 2008 |
| Last update date |
May 16, 2013 |
| Contact name |
Hideo Iwasaki |
| E-mail(s) |
hideo-iwasaki@waseda.jp
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| Organization name |
Waseda University
|
| Department |
Electrical Engineering & Bioscience
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| Street address |
TWIns 1F 2-2 Wakamatsu-cho, Shinjuku
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| City |
Tokyo |
| ZIP/Postal code |
162-8480 |
| Country |
Japan |
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| Samples (205)
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GSM356401, GSM356402, GSM356403, GSM356404, GSM356405, GSM356406
GSM356407, GSM356408, GSM356409, GSM356410, GSM356411, GSM356412, GSM356413, GSM356414, GSM356415, GSM356416, GSM356417, GSM356418, GSM356419, GSM356420, GSM356421, GSM356422, GSM356423, GSM356424, GSM356425, GSM356426, GSM356427, GSM356428, GSM356429, GSM356430, GSM356431, GSM356432, GSM356433, GSM356434, GSM356435, GSM356436, GSM356437, GSM356438, GSM356439, GSM356440, GSM356441, GSM356442, GSM356443, GSM356444, GSM356445, GSM356446, GSM356447, GSM356448, GSM356449, GSM356450, GSM356451, GSM356452, GSM356453, GSM356454, GSM356455, GSM356456, GSM356457, GSM356458, GSM356459, GSM356460, GSM356461, GSM356462, GSM356463, GSM356464, GSM356465, GSM356466, GSM356467, GSM356468, GSM356469, GSM356470, GSM356471, GSM356472, GSM356473, GSM356474, GSM356475, GSM356476, GSM356477, GSM356478, GSM356479, GSM356480, GSM356481, GSM356482, GSM356483, GSM356484, GSM356485, GSM356486, GSM356487, GSM356488, GSM356489, GSM356490, GSM356491, GSM356492, GSM356493, GSM356494, GSM356495, GSM356496, GSM356497, GSM356498, GSM356499, GSM356500, GSM356501, GSM356502, GSM356503, GSM356504, GSM558081, GSM558082, GSM558083, GSM558084, GSM558085, GSM558086, GSM558087, GSM558088, GSM558089, GSM558090, GSM558091, GSM558092, GSM558093, GSM558094, GSM558095, GSM558096, GSM558097, GSM558098, GSM558099, GSM558100, GSM558101, GSM558102, GSM558103, GSM558104, GSM558105, GSM558106, GSM558107, GSM558108, GSM702556, GSM702557, GSM702558, GSM702559, GSM702560, GSM702561, GSM702562, GSM702563, GSM702564, GSM702565, GSM702566, GSM702567, GSM702568, GSM702569, GSM702570, GSM702571, GSM702572, GSM702573, GSM702574, GSM702575, GSM1044698, GSM1044699, GSM1044700, GSM1044701, GSM1142957, GSM1142958, GSM1142959, GSM1142960, GSM1142961, GSM1142962, GSM1142963, GSM1142964, GSM1142965, GSM1186482, GSM1186483, GSM1186484, GSM1186485, GSM1186486, GSM1186487, GSM1186488, GSM1186489, GSM1186490, GSM1186491, GSM1186492, GSM1186493, GSM1340659, GSM1340660, GSM1340661, GSM1340662, GSM1340663, GSM1340664, GSM1340665, GSM1340666, GSM1340667, GSM1340668, GSM1340669, GSM1340670, GSM1340671, GSM1340672, GSM1340673, GSM1340674, GSM1340675, GSM1340676, GSM1340677, GSM1340678, GSM1340679, GSM1340680, GSM1340681, GSM1340682, GSM1340683, GSM1340684, GSM1340685, GSM1340686
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| Series (7)
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| GSE14225 |
Circadian and diurnal expression data of Synechococcus |
| GSE22468 |
Nocturnal expression data of Synechococcus in WT and kaiABC-null strains |
| GSE28430 |
Circadian expression data of Synechococcus in WT, rpoD6-null, sasA-null and rpaA-null strains |
| GSE42542 |
Effect of clpX overexpression in Synechococcus |
| GSE47015 |
Circadian transcriptional profile of Synechococcus under the kaiA overexpression |
| GSE48901 |
Circadian transcriptional profile of Synechococcus without KaiC phosphorylation cycling |
| GSE55637 |
Transcriptional profile of Synechococcus in the dark or light with or without photosynthesis inhibitors |
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| Data table header descriptions |
| ID |
|
| 7942_ID |
S. elongatus PCC 7942 gene ID (cf. Complete Genomic Sequence GenBank Accession number NC_007604) |
| 6301_ID |
S. elongatus PCC 6301 gene ID of sequence used to design oligonucleotide probe (cf. Complete Genomic Sequence GenBank Accession number NC_006576) |
| SYMBOL |
Gene symbol name |
| ORF |
|
| DESCRIPTION |
Gene description |
| Data table |
| ID |
7942_ID |
6301_ID |
SYMBOL |
ORF |
DESCRIPTION |
| syc0001-h_at |
Synpcc7942_1541 |
syc0001_c |
isiB |
syc0001 |
flavodoxin |
| syc0002-h_at |
Synpcc7942_1542 |
syc0002_c |
isiA |
syc0002 |
iron-stress chlorophyll-binding protein |
| syc0003-m_at |
Synpcc7942_1544 |
syc0003_d |
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syc0003 |
panthotenate metabolism flavoprotein |
| syc0004-m_at |
Synpcc7942_1545 |
syc0004_d |
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syc0004 |
similar to plasmid stabilization protein StbB homolog |
| syc0005-m_at |
Synpcc7942_1546 |
syc0005_d |
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syc0005 |
similar to C termimus of tlr0652 (putative ribonuclease II) |
| syc0006-h_at |
Synpcc7942_1548 |
syc0006_c |
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syc0006 |
probable amidase |
| syc0007-m_at |
Synpcc7942_1549 |
syc0007_d |
umuD |
syc0007 |
DNA polymerase V putative SOS mutagenesis protein UmuD |
| syc0008-m_at |
Synpcc7942_1550 |
syc0008_d |
umuC |
syc0008 |
DNA polymerase V |
| syc0009-m_at |
Synpcc7942_1551 |
syc0009_d |
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syc0009 |
hypothetical protein |
| syc0010-h_at |
Synpcc7942_1552 |
syc0010_c |
ilvC |
syc0010 |
ketol-acid reductoisomerase |
| syc0011-m_at |
Synpcc7942_1553 |
syc0011_d |
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syc0011 |
hypothetical protein |
| syc0012-h_at |
Synpcc7942_1554 |
syc0012_c |
clpP |
syc0012 |
ATP-dependent protease ClpP |
| syc0013-m_at |
Synpcc7942_1555 |
syc0013_d |
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syc0013 |
hypothetical protein |
| syc0014-m_at |
Synpcc7942_1556 |
syc0014_d |
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syc0014 |
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| syc0015-h_at |
Synpcc7942_1557 |
syc0015_c |
rpoD6 |
syc0015 |
group 2 RNA polymerase sigma factor |
| syc0016-m_at |
Synpcc7942_1558 |
syc0016_d |
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syc0016 |
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| syc0017-m_at |
Synpcc7942_1559 |
syc0017_d |
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syc0017 |
hypothetical protein |
| syc0018-m_at |
Synpcc7942_1560 |
syc0018_d |
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syc0018 |
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| syc0019-h_at |
Synpcc7942_1561 |
syc0019_c |
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syc0019 |
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| syc0020-h_at |
Synpcc7942_1562 |
syc0020_c |
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syc0020 |
hypothetical protein |
Total number of rows: 2515
Table truncated, full table size 191 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL8012_ProbeSequenceFile_ReadMe.txt.gz |
654 b |
(ftp)(http) |
TXT |
| GPL8012_Syel6301a520114F.cdf.gz |
2.9 Mb |
(ftp)(http) |
CDF |
| GPL8012_Syel6301a520114F_probeSequences.txt.gz |
1.7 Mb |
(ftp)(http) |
TXT |
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