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Platform GPL8235 Query DataSets for GPL8235
Status Public on Mar 05, 2009
Title Agilent_Dm_4.3_112_tiling_c
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Drosophila melanogaster
Manufacturer Agilent Technologies
Manufacture protocol Agilent Technologies
Catalog number AMADID# 016638
Support glass
Coating unknown
 
Description ChIP resolution tiling array for modENCODE. Average probe spacing of 112 bp for Drosophila genome (5.1). 3 of a 4 array set.
 
Submission date Mar 01, 2009
Last update date Mar 05, 2009
Contact name David M MacAlpine
E-mail(s) david.macalpine@duke.edu
Phone 919 681 6077
Organization name Duke University Medical Center
Department Pharmacology and Cancer Biology
Street address Box 3813 DUMC
City Durham
State/province NC
ZIP/Postal code 27714
Country USA
 
Samples (7) GSM432705, GSM432709, GSM432714, GSM432718, GSM1555161, GSM1555165 
Series (5)
GSE17282 Kc167 ORC2 Localization
GSE17283 Kc167 MCM Localization
GSE63680 Kc167 Mcm2-7 Localization in HU

Data table header descriptions
ID
FEATURE Unique local identifier for probe sequence
CHROMOSOME Chromosome
RANGE_GB GenBank accession.version
RANGE_START Genomic coordinate for start of probe sequence
RANGE_END Genomic coordinate for end of probe sequence (+1 nt)
SPOT_ID spot identifier
SEQUENCE Oligo sequence
GENOME_SOURCE Genome source from which probes were designed

Data table
ID FEATURE CHROMOSOME RANGE_GB RANGE_START RANGE_END SPOT_ID SEQUENCE GENOME_SOURCE
1 DmCGHBrightCorner CONTROL: DmCGHBrightCorner agilent_control
2 DarkCorner CONTROL: DarkCorner agilent_control
3 DarkCorner CONTROL: DarkCorner agilent_control
4 DM_DMEL_01139770 chr2L AE014134.5 11397691 11397746 TTGTTTTTAAACTGTCTGCATTTTGGTCACCAAACCATTTCACGAGTTGATAAAC flybase|dmel5.1
5 DM_DMEL_02859395 chr2R AE013599.4 5213631 5213676 AGAGATAGCAGCCGTATGCTGGCCAAACAAAAACAGGACGAGAAC flybase|dmel5.1
6 DM_DMEL_00043793 chr2L AE014134.5 437921 437966 TTGATTGGTGAAATTGTTCGGCAGTCGGTGAGCCCAAAAGAGGCG flybase|dmel5.1
7 DM_DMEL_01788633 chr2L AE014134.5 17886321 17886369 GCCGGAGTACCATAAAAAATTAAGTGACACTCAAACGGAGACACTGGG flybase|dmel5.1
8 DM_DMEL_03085813 chr2R AE013599.4 7477811 7477856 CTGCTAGTCAAACTGGGGTGCATTCCTCCCAATGATGAATTGCTT flybase|dmel5.1
9 DM_DMEL_00183928 chr2L AE014134.5 1839271 1839320 CCACCGAGTATGAAATATTCGAGGCATTTTCCGGATTTTTTCTGTGTTT flybase|dmel5.1
10 DM_DMEL_01387964 chr2L AE014134.5 13879631 13879676 ATCCGGAGACGATCCCTGAGGGTCAAGAGGGCCAAGAGTCTGGTG flybase|dmel5.1
11 DM_DMEL_01772279 chr2L AE014134.5 17722781 17722839 TATTTGAAGCACTTTCAAGAACTGTTGTCGTTGAGCACATTCATTAAGAGTGAAGGTT flybase|dmel5.1
12 DM_DMEL_00594490 chr2L AE014134.5 5944891 5944937 CAGGCACTCGAGCTGTTCTGTTTGCCGATTATTGATAAGTCCAACT flybase|dmel5.1
13 DM_DMEL_00966182 chr2L AE014134.5 9661811 9661862 TGCCAAACTATTTAAATATTATTCCAAATGAAGGGCACAGCAGAAGCTCGG flybase|dmel5.1
14 DM_DMEL_01863045 chr2L AE014134.5 18630441 18630501 CCGGCCATTTTTCTACCCTTATTACGAACTTCCTGTACTATGTCAGTATACCCTTTCTAG flybase|dmel5.1
15 DM_DMEL_01750476 chr2L AE014134.5 17504751 17504796 AGTATTGTTCAGGAGACGAAGAATCGGATATGCGCCATGTTGGAG flybase|dmel5.1
16 DM_DMEL_00744757 chr2L AE014134.5 7447561 7447617 AAATAGTCCCAGGCAAAAGCCGAAAATGCCGATAATTAATTTGCGATTACTTTTTT flybase|dmel5.1
17 DM_DMEL_00828795 chr2L AE014134.5 8287941 8288001 ACTCGCAATGATATTCAAGCTCGTTTTATAAAATAAAACCTATTGCAAATGAAGTTAATT flybase|dmel5.1
18 DM_DMEL_01490643 chr2L AE014134.5 14906421 14906479 GTCTGGTCGAGAACAACAATAGCATAAGTCGCATGCATAATTGAGTCGATATTTTTTT flybase|dmel5.1
19 DM_DMEL_01003971 chr2L AE014134.5 10039701 10039750 ACGTAAAATCTGAGCAAACGATGACATTTCTACTTGGCATTGCTCGAAC flybase|dmel5.1
20 DM_DMEL_02527373 chr2R AE013599.4 1893411 1893471 ATCAGCTGTTATGAGAATAGAAAAAATATCGATTTGTAGGTGGTTTCACCCTAGATGGCG flybase|dmel5.1

Total number of rows: 243504

Table truncated, full table size 29725 Kbytes.




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