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Platform GPL8236 Query DataSets for GPL8236
Status Public on Mar 05, 2009
Title Agilent_Dm_4.3_112_tiling_d
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Drosophila melanogaster
Manufacturer Agilent Technologies
Manufacture protocol Agilent Technologies
Catalog number AMADID# 016639
Support glass
Coating unknown
 
 
Submission date Mar 01, 2009
Last update date Mar 05, 2009
Contact name David M MacAlpine
E-mail(s) david.macalpine@duke.edu
Phone 919 681 6077
Organization name Duke University Medical Center
Department Pharmacology and Cancer Biology
Street address Box 3813 DUMC
City Durham
State/province NC
ZIP/Postal code 27714
Country USA
 
Samples (6) GSM432704, GSM432708, GSM432715, GSM432719, GSM1555162, GSM1555166
Series (4)
GSE17282 Kc167 ORC2 Localization
GSE17283 Kc167 MCM Localization
GSE63680 Kc167 Mcm2-7 Localization in HU

Data table header descriptions
ID
FEATURE Unique local identifier for probe sequence
CHROMOSOME Chromosome
RANGE_GB GenBank accession.version
RANGE_START Genomic coordinate for start of probe sequence
RANGE_END Genomic coordinate for end of probe sequence (+1 nt)
SPOT_ID
SEQUENCE Oligo sequence
GENOME_SOURCE Genome source from which probes were designed

Data table
ID FEATURE CHROMOSOME RANGE_GB RANGE_START RANGE_END SPOT_ID SEQUENCE GENOME_SOURCE
1 DmCGHBrightCorner CONTROL: DmCGHBrightCorner agilent_control
2 DarkCorner CONTROL: DarkCorner agilent_control
3 DarkCorner CONTROL: DarkCorner agilent_control
4 DM_DMEL_06865979 chr3L AE014296.4 20844111 20844162 AAGTGTTCATTAATATAAATCCAATGACAGATTCCTCCCCTCGCGTGTGTG flybase|dmel5.1
5 DM_DMEL_09537401 chr3R AE014297.2 20459391 20459436 TCGGTGAATGCGTCCAATGGCAAGGTGAAGCGGTCATGAGAATAC flybase|dmel5.1
6 DM_DMEL_08244026 chr3R AE014297.2 7525641 7525686 CGTGATTGGCCCGGCCATGGATGAGTCTTGTCTTCGAAAAATATG flybase|dmel5.1
7 DM_DMEL_09293632 chr3R AE014297.2 18021701 18021758 AGAATTGCCTTTTTATGTTACGCGAGGTATTGCCCATTCGATAGACCTACTATAGCG flybase|dmel5.1
8 DM_DMEL_09078617 chr3R AE014297.2 15871551 15871609 TTGGTTCAAGTAAAATCGAAAAAATTCATTACGATCGTATTAGAAGCCAAGCAAAATG flybase|dmel5.1
9 DM_DMEL_06946587 chr3L AE014296.4 21650191 21650241 TCCCAGGGTAATATGTGATCGACAAATGGATCAAGATCTTTAAGCTGCAG flybase|dmel5.1
10 DM_DMEL_06572565 chr3L AE014296.4 17909971 17910031 AGTAATAGAATAATAGATATTAGTTATTCGGTTAGTTATCCCTTCCCAACACTAATCTTG flybase|dmel5.1
11 DM_DMEL_08284782 chr3R AE014297.2 7933201 7933246 AGCACAAATTGGGCTAACTACTCAGGCCACAGTACGGCAAACAGA flybase|dmel5.1
12 DM_DMEL_09127473 chr3R AE014297.2 16360111 16360163 TATTAGAGACTATTTAACCTAATCCAAATGGATCCGGCCATCACTTGGCCTG flybase|dmel5.1
13 DM_DMEL_08934000 chr3R AE014297.2 14425381 14425428 CTTTCGATGACAGTAACTTGACCAAATTGCTGGAGGATCAGCGTAAC flybase|dmel5.1
14 DM_DMEL_07721571 chr3R AE014297.2 2301091 2301138 AGGTTGTGACTCTGCCCAACTGGAAACACAATAAATACTGCAAGTGG flybase|dmel5.1
15 DM_DMEL_08563720 chr3R AE014297.2 10722581 10722632 CAAGGGTCTCGAAGTAGAGATACGGCTGCTGCCTAGCATTGAAGTACTTTT flybase|dmel5.1
16 DM_DMEL_07042568 chr3L AE014296.4 22610001 22610047 ACACGCCGAACCCTTCAGCAGCTTAAACTATTTCCACTTTGTTGTT flybase|dmel5.1
17 DM_DMEL_09195801 chr3R AE014297.2 17043391 17043438 AGGTATAGTCCAGAGCCCTCGTTATTCAAGAATTCGCCAGCAACTGT flybase|dmel5.1
18 DM_DMEL_06898449 chr3L AE014296.4 21168811 21168862 AAATATGCAGCATTAATCGATAAGTCACAGTGAGCCGAACAATGGCATATG flybase|dmel5.1
19 DM_DMEL_06456709 chr3L AE014296.4 16751411 16751456 AAAAGAGCTACCAAAAATGGCAATGCCAATTTCAGTTTGGCAGCA flybase|dmel5.1
20 DM_DMEL_06532534 chr3L AE014296.4 17509661 17509721 GCACAGCTTCGGTACGTATTGAGTATGGCGAGGTGACTATATACATTATACCAGACCAAT flybase|dmel5.1

Total number of rows: 243504

Table truncated, full table size 29837 Kbytes.




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Supplementary data files not provided
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