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Status
Public on Dec 31, 2009
Title
NimbleGen Drosophila melanogaster 145K 12plex custom expression array (080523_D_melanogaster_5.5_expr)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Drosophila melanogaster Manufacturer
NimbleGen Systems Inc.
Manufacture protocol
Details on the manufacture protocol can be found on http://www.nimblegen.com/technology/index.html
Description
Nimblegen custom design 12 plex array for Drosophila melanogaster: 12 identical plex on one slide with about 135,000 probes on each plex. Probes were designed based on the 5.5 release of the Drosophila melanogaster annotation and average of 7 array element probes per predicted genes was selected throughout gene models without a 3’ bias. The design is freely available from Nimblegen.
Contributor(s)
Malone J , Zhang Y , Oliver B Submission date
May 26, 2009
Last update date
Feb 05, 2015
Contact name
Brian Oliver
E-mail(s)
briano@nih.gov Phone
301-204-9463
Organization name
NIDDK, NIH
Department
LBG
Lab
Developmental Genomics
Street address
50 South Drive
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Samples (138)
GSM409347 , GSM409348 , GSM409349 , GSM409350 , GSM778493 , GSM778494
GSM778495 ,
GSM778496 ,
GSM778497 ,
GSM778498 ,
GSM778499 ,
GSM778500 ,
GSM778501 ,
GSM778502 ,
GSM778503 ,
GSM778504 ,
GSM778505 ,
GSM778506 ,
GSM778507 ,
GSM778508 ,
GSM778509 ,
GSM778510 ,
GSM778511 ,
GSM778512 ,
GSM778513 ,
GSM778514 ,
GSM778515 ,
GSM778516 ,
GSM778517 ,
GSM778518 ,
GSM778519 ,
GSM778520 ,
GSM778521 ,
GSM778522 ,
GSM778523 ,
GSM778524 ,
GSM778525 ,
GSM778526 ,
GSM778527 ,
GSM778528 ,
GSM778529 ,
GSM778530 ,
GSM778531 ,
GSM778532 ,
GSM778533 ,
GSM778534 ,
GSM778535 ,
GSM778536 ,
GSM778537 ,
GSM778538 ,
GSM778539 ,
GSM778540 ,
GSM778541 ,
GSM778542 ,
GSM778543 ,
GSM778544 ,
GSM778545 ,
GSM778546 ,
GSM778547 ,
GSM778548 ,
GSM778549 ,
GSM778550 ,
GSM778551 ,
GSM778552 ,
GSM778553 ,
GSM778554 ,
GSM778555 ,
GSM778556 ,
GSM778557 ,
GSM778558 ,
GSM778559 ,
GSM778560 ,
GSM778561 ,
GSM778562 ,
GSM778563 ,
GSM778564 ,
GSM778565 ,
GSM778566 ,
GSM778567 ,
GSM778568 ,
GSM778569 ,
GSM778570 ,
GSM778571 ,
GSM778572 ,
GSM778573 ,
GSM778574 ,
GSM778575 ,
GSM778576 ,
GSM778577 ,
GSM778578 ,
GSM778579 ,
GSM778580 ,
GSM778581 ,
GSM778582 ,
GSM778583 ,
GSM778584 ,
GSM778585 ,
GSM778586 ,
GSM778587 ,
GSM778588 ,
GSM778589 ,
GSM778590 ,
GSM778591 ,
GSM778592 ,
GSM778593 ,
GSM778594 ,
GSM778595 ,
GSM778596 ,
GSM778597 ,
GSM778598 ,
GSM778599 ,
GSM778600 ,
GSM778601 ,
GSM778602 ,
GSM778603 ,
GSM778604 ,
GSM778605 ,
GSM778606 ,
GSM778607 ,
GSM778608 ,
GSM778609 ,
GSM778610 ,
GSM778611 ,
GSM778612 ,
GSM778613 ,
GSM778614 ,
GSM778615 ,
GSM778616 ,
GSM778617 ,
GSM778618 ,
GSM778619 ,
GSM778620 ,
GSM778621 ,
GSM778622 ,
GSM778623 ,
GSM778624 ,
GSM778625 ,
GSM778626 Series (3)
GSE16344 Expression in Aneuploid Drosophila S2 Cells
GSE31386 Microarray expression analysis of Drosophila DrosDel deficiency lines
GSE31407 Drosophila DrosDel deficiency and diploid control flies
Relations Alternative to
GPL19743 (alternative)
Data table header descriptions ID PROBE_ID NimbleGen probe identifier
PROBE_SEQUENCE DNA sequence synthesized on the array
ROW_NUM Y coordinate of the feature on the array
COL_NUM X coordinate of the feature on the array
SEQ_ID Target Sequence identifier
FLYBASE Flybase ID
PROBE_CLASS different control or experimental spots
ORF SPOT_ID
Data table ID PROBE_ID PROBE_SEQUENCE ROW_NUM COL_NUM SEQ_ID FLYBASE PROBE_CLASS ORF SPOT_ID 7651_0001_0001
XENOTRACK48P01
TAGCGTTGCTTAGGCGTACGCAGTCTGATGCGTCGTTAGCATCGGCAANNNNNNNNNN
1
1
CROSSHYBE
NA
control:crosshybe
--control:crosshybe
7651_0001_0002
EMPTY
N
2
1
EMPTY
NA
control:empty
--control:empty
7651_0001_0003
XENOTRACK48P01
TAGCGTTGCTTAGGCGTACGCAGTCTGATGCGTCGTTAGCATCGGCAANNNNNNNNNN
3
1
CROSSHYBE
NA
control:crosshybe
--control:crosshybe
7651_0001_0004
EMPTY
N
4
1
EMPTY
NA
control:empty
--control:empty
7651_0001_0005
XENOTRACK48P02
CGATGCGACGCGAACTAAGCAGTTCGGCGCAGTCGACTAGTATAACAGNNNNNNNN
5
1
CROSSHYBE
NA
control:crosshybe
--control:crosshybe
7651_0001_0006
EMPTY
N
6
1
EMPTY
NA
control:empty
--control:empty
7651_0001_0007
XENOTRACK48P03
GTCGCAACGAGTTAGCGTGATCGACTTGACTGCGTACGCACAGCAATGNNNNNNNNNN
7
1
CROSSHYBE
NA
control:crosshybe
--control:crosshybe
7651_0001_0008
EMPTY
N
8
1
EMPTY
NA
control:empty
--control:empty
7651_0001_0009
XENOTRACK48P04
CTGAGCGATACGCGTTAACCAGGCCGGTCGTATCAGATACGCATTCGGNNNNNNN
9
1
CROSSHYBE
NA
control:crosshybe
--control:crosshybe
7651_0001_0010
EMPTY
N
10
1
EMPTY
NA
control:empty
--control:empty
7651_0001_0011
XENOTRACK48P05
CATGACACGGAGTAAGCGAGCCTACAGCGAGCATAATGATCGGCTAGCNNNNNNNNNNN
11
1
CROSSHYBE
NA
control:crosshybe
--control:crosshybe
7651_0001_0012
EMPTY
N
12
1
EMPTY
NA
control:empty
--control:empty
7651_0001_0013
XENOTRACK48P06
CCTCGTAAGCTTGACGTGCACTCGGTCCGGAATCACGTACGTCGGCTANNNNNN
13
1
CROSSHYBE
NA
control:crosshybe
--control:crosshybe
7651_0001_0014
EMPTY
N
14
1
EMPTY
NA
control:empty
--control:empty
7651_0001_0015
XENOTRACK48P07
GCGTATGAATCGCGGATAGGCATGCCGTAAGCGAGCTAGAACGAATGGNNNNNNNNN
15
1
CROSSHYBE
NA
control:crosshybe
--control:crosshybe
7651_0001_0016
EMPTY
N
16
1
EMPTY
NA
control:empty
--control:empty
7651_0001_0017
XENOTRACK48P08
CCGCGTGCAATTATCGGAGTCTAGCGGAAGTACACAACTCGGTCGTTGNNNNNN
17
1
CROSSHYBE
NA
control:crosshybe
--control:crosshybe
7651_0001_0018
EMPTY
N
18
1
EMPTY
NA
control:empty
--control:empty
7651_0001_0019
XENOTRACK48P09
CCGTTGAGTAACGTCGAGCGTTAGGTCTCAGCGTAAGCGTCGATAACGNNNNN
19
1
CROSSHYBE
NA
control:crosshybe
--control:crosshybe
7651_0001_0020
EMPTY
N
20
1
EMPTY
NA
control:empty
--control:empty
145648 22751 Kbytes .Supplementary file Size Download File type/resource GPL8593.ndf.gz
8.7 Mb
(ftp) (http) NDF
GPL8593.ngd.gz
1.0 Mb
(ftp) (http) NGD
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