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Platform GPL8596 Query DataSets for GPL8596
Status Public on May 21, 2010
Title NimbleGen Matzkin Drosophila mojavensis 70K array v1.0.
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Drosophila mojavensis
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
 
 
Submission date May 26, 2009
Last update date May 21, 2010
Contact name Luciano Matias Matzkin
E-mail(s) lmm0015@uah.edu
Phone 256-824-4326
Organization name University of Alabama in Huntsville
Department Biological Sciences
Street address 301 Sparkman Drive
City Huntsville
State/province Alabama
ZIP/Postal code 35899
Country USA
 
Samples (52) GSM408837, GSM408838, GSM408839, GSM408840, GSM408841, GSM408842 
Series (2)
GSE16234 Transcriptional regulation of metabolism associated with desiccation resistance of the cactophilic Drosophila mojavensis
GSE35937 Population transcriptomics of cactus host shifts in Drosophila mojavensis

Data table header descriptions
ID
SEQ_ID GeneID
GENOME_ACC GenBank accession number of the D. mojavensis genome region used.
ORF Link to Entrez corresponding Gene Entry
GLEAN_PROBFRACTION
HOMOLOGY_BASED_CONFIDENCE
DMEL_ORTHOLOG
DMEL_ORTHOLOGY_SOURCE
ALIAS
SEQUENCE Oligo sequence of probe

Data table
ID SEQ_ID GENOME_ACC ORF GLEAN_PROBFRACTION HOMOLOGY_BASED_CONFIDENCE DMEL_ORTHOLOG DMEL_ORTHOLOGY_SOURCE ALIAS SEQUENCE
dmoj_GLEANR_10000P00143 dmoj_GLEANR_10000 CH933806.1 dmoj_GLEANR_10000 1 high FBgn0020249 fuzzy_reciprocal_blast stck TCTGCGCTCAGTGCTTCCGACCGTTTCAGGATGGCATTTTTTACGAGTTCGAAGGACGCA
dmoj_GLEANR_10000P00539 dmoj_GLEANR_10000 CH933806.1 dmoj_GLEANR_10000 1 high FBgn0020249 fuzzy_reciprocal_blast stck ATGCCACAGCGCGCGAAGTCAAGAGTCGGCCTGGCCTGGTCGCGAACGATATGAACGAAC
dmoj_GLEANR_10000P00831 dmoj_GLEANR_10000 CH933806.1 dmoj_GLEANR_10000 1 high FBgn0020249 fuzzy_reciprocal_blast stck TCAAGTCATTGCTGGAGATGTTTTCACCGCATTGAACAAGGCATGGTGCGTTCATCACTT
dmoj_GLEANR_10000P00959 dmoj_GLEANR_10000 CH933806.1 dmoj_GLEANR_10000 1 high FBgn0020249 fuzzy_reciprocal_blast stck TGTGCAAGAAATGCTACGAACGGTTTCCCAACGAACTGCGACGACGTCTGCGCATCGCCC
dmoj_GLEANR_10001P00002 dmoj_GLEANR_10001 CH933806.1 dmoj_GLEANR_10001 0.993916 low TGACCAAAACGTCGTCAACATCGACGCCTTCTGCCAACAACCAGCGAGCCGAGGGATGGA
dmoj_GLEANR_10001P00013 dmoj_GLEANR_10001 CH933806.1 dmoj_GLEANR_10001 0.993916 low TCGTCAACATCGACGCCTTCTGCCAACAACCAGCGAGCCGAGGGATGGAACGGAACGGCA
dmoj_GLEANR_10001P00127 dmoj_GLEANR_10001 CH933806.1 dmoj_GLEANR_10001 0.993916 low CGGCTTTTTACGATGCGCAATAAATTGGCGCTGCTTGGCGATACTTGGCCGTGTATGCAA
dmoj_GLEANR_10001P00143 dmoj_GLEANR_10001 CH933806.1 dmoj_GLEANR_10001 0.993916 low GCAATAAATTGGCGCTGCTTGGCGATACTTGGCCGTGTATGCAAAAGGTGCTTCAAACAA
dmoj_GLEANR_10002P00038 dmoj_GLEANR_10002 CH933806.1 dmoj_GLEANR_10002 0.999835 low CTGAAGCAGACACTGAGGGAGATGCTGAGACAGCAGCGTTCAGCCTCGTGGCACAGCTGC
dmoj_GLEANR_10002P00166 dmoj_GLEANR_10002 CH933806.1 dmoj_GLEANR_10002 0.999835 low CTGTTGGAGCCGGTTGTCTGCCTGCAGCAGTCGGCGTTAACTGTCCTTCAACAGGTGCTG
dmoj_GLEANR_10002P00196 dmoj_GLEANR_10002 CH933806.1 dmoj_GLEANR_10002 0.999835 low TCGGCGTTAACTGTCCTTCAACAGGTGCTGGGCGATCTTGGACTCGGTTCATTGGCCACA
dmoj_GLEANR_10002P00254 dmoj_GLEANR_10002 CH933806.1 dmoj_GLEANR_10002 0.999835 low CACAGGTGGCAAATCTGCTGACACCGTTATTCGATCAAATTAACGGTCTGCTTACACAAA
dmoj_GLEANR_10003P00476 dmoj_GLEANR_10003 CH933806.1 dmoj_GLEANR_10003 0.680864 high FBgn0000576 fuzzy_reciprocal_blast ems GCCTCTCCCCGCTGGGCGATGTGCACTCCACACCCGTTGCTGTCTCCCTGAAGCGCGAGC
dmoj_GLEANR_10003P00822 dmoj_GLEANR_10003 CH933806.1 dmoj_GLEANR_10003 0.680864 high FBgn0000576 fuzzy_reciprocal_blast ems GCTGCCAGGCATGCCGCCAGCGGGCTTAGTGCGTCCGTTCCCGATGGGCCCAGGCGGTCC
dmoj_GLEANR_10003P01145 dmoj_GLEANR_10003 CH933806.1 dmoj_GLEANR_10003 0.680864 high FBgn0000576 fuzzy_reciprocal_blast ems TGCTCAGTCGCCACGGCCGCATCTTTCCACACCGTTTCCCTGGAAACTTCCTTCTGCAGC
dmoj_GLEANR_10003P01306 dmoj_GLEANR_10003 CH933806.1 dmoj_GLEANR_10003 0.680864 high FBgn0000576 fuzzy_reciprocal_blast ems CGCAAGGCACTCGCACAGTCACTCAACCTGTCGGAGACCCAGGTCAAGGTCTGGTTCCAG
dmoj_GLEANR_10004P00164 dmoj_GLEANR_10004 CH933806.1 dmoj_GLEANR_10004 1 high FBgn0016672 fuzzy_reciprocal_blast Ipp TGGCCGATGTGTTAATCCAGGAAACTATAAGGCATGAGGTTGGCAAATTGTTTCCAGAGA
dmoj_GLEANR_10004P00431 dmoj_GLEANR_10004 CH933806.1 dmoj_GLEANR_10004 1 high FBgn0016672 fuzzy_reciprocal_blast Ipp TACCTGAAACACTCGATTATAGTAATTTAGGCGTTTGGATAGATCCTATTGATGCCACTG
dmoj_GLEANR_10004P00653 dmoj_GLEANR_10004 CH933806.1 dmoj_GLEANR_10004 1 high FBgn0016672 fuzzy_reciprocal_blast Ipp TGTACAGTTCCTCCTTAAATTGGGGAGTCTGCTTGCCCACTCTGAAGTCCCACAACTGCA
dmoj_GLEANR_10004P00881 dmoj_GLEANR_10004 CH933806.1 dmoj_GLEANR_10004 1 high FBgn0016672 fuzzy_reciprocal_blast Ipp TACTCAGCAAAGGTTCTACATTCCGCTGGGATACATGCGGTCCCCAAGCTATTCTTCGCG

Total number of rows: 69997

Table truncated, full table size 11408 Kbytes.




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Supplementary file Size Download File type/resource
GPL8596_2007-08-06_D_mojavensis_expr.ndf.gz 4.3 Mb (ftp)(http) NDF
GPL8596_2007-08-06_D_mojavensis_expr.ngd.gz 184.4 Kb (ftp)(http) NGD

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