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GEO help: Mouse over screen elements for information. |
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Status |
Public on Oct 08, 2010 |
Title |
Agilent-021219 New15K60mer-EfetidaArray |
Technology type |
in situ oligonucleotide |
Distribution |
non-commercial |
Organism |
Eisenia fetida |
Manufacturer |
Agilent |
Manufacture protocol |
www.agilent.com
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Submission date |
Oct 09, 2009 |
Last update date |
Oct 08, 2010 |
Contact name |
Natalie Barker |
E-mail(s) |
natalie.d.barker@usace.army.mil
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Organization name |
Engineer Research and Development Center
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Street address |
3909 Halls Ferry Rd.
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City |
Vicksburg |
State/province |
MS |
ZIP/Postal code |
39180 |
Country |
USA |
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Samples (368)
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GSM460705, GSM460706, GSM460707, GSM460708, GSM460709, GSM460710
GSM460711, GSM460712, GSM460713, GSM460714, GSM460715, GSM460716, GSM460717, GSM460718, GSM460719, GSM460720, GSM460721, GSM460722, GSM460723, GSM460724, GSM460725, GSM460726, GSM460727, GSM460728, GSM460729, GSM460730, GSM460731, GSM460732, GSM460733, GSM460734, GSM460735, GSM460736, GSM460737, GSM460738, GSM460739, GSM460740, GSM460741, GSM460742, GSM460743, GSM460744, GSM460745, GSM460746, GSM460747, GSM460748, GSM460749, GSM460750, GSM460751, GSM460752, GSM460753, GSM460754, GSM460755, GSM460756, GSM460757, GSM460758, GSM460759, GSM460760, GSM460761, GSM460762, GSM460763, GSM460764, GSM460765, GSM460766, GSM460767, GSM460768, GSM460769, GSM460770, GSM460771, GSM460772, GSM460773, GSM460774, GSM460775, GSM460776, GSM460777, GSM460778, GSM460779, GSM460780, GSM460781, GSM460782, GSM460783, GSM460784, GSM460785, GSM460786, GSM460787, GSM460788, GSM460789, GSM460790, GSM460791, GSM460792, GSM460793, GSM460794, GSM460795, GSM460796, GSM460797, GSM460798, GSM460799, GSM460800, GSM460801, GSM460802, GSM460803, GSM460804, GSM460805, GSM460806, GSM460807, GSM460808, GSM460809, GSM460810, GSM460811, GSM460812, GSM460813, GSM460814, GSM460815, GSM460816, GSM460817, GSM460818, GSM460819, GSM460820, GSM460821, GSM460822, GSM460823, GSM460824, GSM460825, GSM460826, GSM460827, GSM460828, GSM460829, GSM460830, GSM460831, GSM460832, GSM460833, GSM460834, GSM460835, GSM460836, GSM460837, GSM460838, GSM460839, GSM460840, GSM460841, GSM460842, GSM460843, GSM460844, GSM460845, GSM460846, GSM460847, GSM460848, GSM460849, GSM460850, GSM460851, GSM460852, GSM460853, GSM460854, GSM460855, GSM460856, GSM460857, GSM460858, GSM460859, GSM460860, GSM460861, GSM460862, GSM460863, GSM460864, GSM460865, GSM460866, GSM460867, GSM460868, GSM460869, GSM460870, GSM460871, GSM460872, GSM460873, GSM460874, GSM460875, GSM460876, GSM460877, GSM460878, GSM460879, GSM460880, GSM460881, GSM460882, GSM460883, GSM460884, GSM460885, GSM460886, GSM460887, GSM460888, GSM460889, GSM460890, GSM460891, GSM460892, GSM460893, GSM460894, GSM460895, GSM460896, GSM460897, GSM460898, GSM460899, GSM460900, GSM460901, GSM460902, GSM460903, GSM460904, GSM460905, GSM460906, GSM460907, GSM460908, GSM460909, GSM460910, GSM460911, GSM460912, GSM460913, GSM460914, GSM460915, GSM460916, GSM460917, GSM460918, GSM460919, GSM460920, GSM460921, GSM460922, GSM460923, GSM460924, GSM460925, GSM460926, GSM460927, GSM460928, GSM460929, GSM460930, GSM460931, GSM460932, GSM460933, GSM460934, GSM460935, GSM460936, GSM460937, GSM460938, GSM460939, GSM460940, GSM460941, GSM460942, GSM460943, GSM460944, GSM460945, GSM460946, GSM460947, GSM460948, GSM460949, GSM460950, GSM460951, GSM460952, GSM1052429, GSM1052430, GSM1052431, GSM1052432, GSM1052433, GSM1052434, GSM1052435, GSM1052436, GSM1052437, GSM1052438, GSM1052439, GSM1052440, GSM1052441, GSM1052442, GSM1052443, GSM1052444, GSM1052445, GSM1052446, GSM1052447, GSM1052448, GSM1052449, GSM1052450, GSM1052451, GSM1052452, GSM1052453, GSM1052454, GSM1052455, GSM1052456, GSM1052457, GSM1052458, GSM1052459, GSM1052460, GSM1052461, GSM1052462, GSM1052463, GSM1052464, GSM1052465, GSM1052466, GSM1052467, GSM1052468, GSM1052469, GSM1052470, GSM1052471, GSM1052472, GSM1052473, GSM1052474, GSM1052475, GSM1052476, GSM1052477, GSM1052478, GSM1052479, GSM1052480, GSM1052481, GSM1052482, GSM1052483, GSM1052484, GSM1052485, GSM1052486, GSM1052487, GSM1052488, GSM1052489, GSM1052490, GSM1052491, GSM1052492, GSM1052493, GSM1052494, GSM1052495, GSM1052496, GSM1052497, GSM1052498, GSM1052499, GSM1052500, GSM1052501, GSM1052502, GSM1052503, GSM1052504, GSM1052505, GSM1052506, GSM1052507, GSM1052508, GSM1052509, GSM1052510, GSM1052511, GSM1052512, GSM1052513, GSM1052514, GSM1052515, GSM1052516, GSM1052517, GSM1052518, GSM1052519, GSM1052520, GSM1052521, GSM1052522, GSM1052523, GSM1052524, GSM1052525, GSM1052526, GSM1052527, GSM1052528, GSM1052529, GSM1052530, GSM1052531, GSM1052532, GSM1052533, GSM1052534, GSM1052535, GSM1052536, GSM1052537, GSM1052538, GSM1052539, GSM1052540, GSM1052541, GSM1052542, GSM1052543, GSM1052544, GSM1052545, GSM1052546, GSM1052547, GSM1052548
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Series (2) |
GSE18495 |
Discovery of biomarker genes form earthworm microarray data |
GSE42866 |
Predicting HMX bioavailability using microarray gene expression data and regression modeling |
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Data table header descriptions |
ID |
ID # |
COL |
Column |
ROW |
Row |
Name |
Name |
CONTROL_TYPE |
Control Type |
CHROMOSOMAL_LOCATION |
Chromosomal Location |
SEQUENCE |
60mer probe Sequence |
TargetID |
Target ID |
TargetSequence |
Target Sequence |
PMT400_Mean |
PMT400_Mean- value calculated from raw data |
PMT400_CV |
PMT400_Coefficient of Variance- value calculated from raw data |
ProbeName |
Probe Name |
GI |
Target GenBank (gi number) |
CLONE_ID |
Target GenBank (EST clone) |
SPOT_ID |
spots without GI or CLONE_ID |
Data table |
ID |
COL |
ROW |
Name |
CONTROL_TYPE |
CHROMOSOMAL_LOCATION |
SEQUENCE |
TargetID |
TargetSequence |
PMT400_Mean |
PMT400_CV |
ProbeName |
GI |
CLONE_ID |
SPOT_ID |
1 |
96 |
164 |
GE_BrightCorner |
GE_BrightCorner |
pos |
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--GE_BrightCorner |
2 |
96 |
162 |
DarkCorner |
DarkCorner |
pos |
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--DarkCorner |
3 |
96 |
160 |
DarkCorner |
DarkCorner |
pos |
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--DarkCorner |
4 |
96 |
158 |
TA2-190364 |
FALSE |
unmapped |
TGTGTATGTTGAAGAGTTCGGAGTTGCTTTCCAATTACTTAAGGCTCTCTGTTTCTAGAT |
contig24004 |
ATCtAgAAACAgaGAGCCTTAAGTAattGgAAaGCAACtccgaaCtCTtCAaCaTACACACAaCATATCCAGATCCAAATCTAGCATACACATTAACATCCAGGTAATTTCATTCATCCATCAAaCACAAAGTTCATAACTTTGTCCGGgCATGATTACCATTATTAGTTAGGACCGCTGTGGCCCAAACTAGATCCTTTGCAACCATTGGgCCcTCCcTTtGgAAT |
699.75 |
0.124837611 |
TA2-190364 |
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contig24004 |
5 |
96 |
156 |
TA2-068806 |
FALSE |
unmapped |
CACTTTGTTGGATGGACAGTTTCTGAATTTTCAAACATTCTGTGGATCAGTCATAAAATC |
contig11387 |
CTTATATAtGATTTTATGACTGATCCACAGAATGTTTGAAAATTCAGAAACTGTCCATCCAACAAAGTGCAAAAGTCTTTTGTACAGACTATCTCTTCTTGAATCCATATTTCTTCCTCTCATAGAAGAGGTCAGTCTTTGCACTGCCAAGATTCACTATCTTTGGACAACCATCTCTGTCTTTCTCTGTGaTtGTACATTCTTTGCAGTAGTAGGttCAT |
240 |
0.154672593 |
TA2-068806 |
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contig11387 |
6 |
96 |
154 |
TA1-236167 |
FALSE |
unmapped |
TGGTAAAGACCAGGAAAGGGAGAAGCCTCTTGGCAGATGTTGAAGTCAATTCCAACAAGA |
contig08196 |
CAATTGCGTAATCCAGGTGGCTGGTTtCCAGCAGCCGAGCCAGGTGGTAAAGACCAGGAAAGGGAGAAGCCTCTTGGCAGATGTtGAAGTCAATTCCAACAAGACGCTGAATCTGGCgCCAGAGTTCACCGACATGTATCCAGTCATCTTCAACATCATCCTTTGGACAATGATTGCCATTGCTCTGGCAATCTTTGCCATCTCTTGGGGaa |
846.125 |
0.150986674 |
TA1-236167 |
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contig08196 |
7 |
96 |
152 |
TA2-137549 |
FALSE |
unmapped |
GGTTGTTACTGTAACAGTAATTTATGACAGATGCTGACGTTAAATAATAGCACGAGTATC |
EW2_F1P02_H01 |
CGTCTTGGCCGAAATTCAGATTAGCACCTTGGATGCCAAAAAGATTGTAATTACTTAATTAAATTGATACTCGTGCTATTATTTAACGTCAGCATCTGTCATAAATTACTGTTACAGTAACAACCAGTTTGCACAAGTCCAACTGTCAACGTGT |
706.75 |
0.190107763 |
TA2-137549 |
157425762 |
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8 |
96 |
150 |
TA1-092414 |
FALSE |
unmapped |
CTAAGGGGTCATTGTTGGTATAAAGTGAGGTGTGAAATTCCTTTGTTGAGTTTGTTAAAT |
SMcontig_337 |
GTAATCATTGTGGTAATCTGTAAACTTAAAGAAACAAAACGGTAAGTAAACAAACTAAGTTAGACAAATTCGGCTTCTACGTAAATGTACAATAATTACATGTAGCAAAGGTACAGCGTATATTATGATGTTCTATTACAGATTAAGACTCATTTTCATATTTTTTCTTTTAATCTAAATTATGTGTTAATTCAAATAAGCATTATTGCCATCATCTTTTCTTGAAAGCCTTTGCTTTTTTTACTTACTAAAATG |
505.5 |
0.107074966 |
TA1-092414 |
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SMcontig_337 |
9 |
96 |
148 |
TA2-061921 |
FALSE |
unmapped |
CAAACGTAGGCCAAAAACTGCTTTAGAATAACGAACATTTTCGAATGAAATAAAGGCAAG |
contig24210 |
GTCcACCATATtAAGAAGAAGCTAAaGTATAGgTCTAATAAACTTGCCTTtATTTCATTCGAAAATGTTCGTTATTCTAAAGCAGTTTTTGGCCTACGTTTGTCTTTATCCATTTTATTGTTGCAGGATATTCGATAGCTTTAAGCCTGCATAGAAGTGGCTATTtCGTAATAAGGTGCCTAATTAATAGATTAATTAATAAAGGTTCGAGTAAGTAAAGCGAAATCATCGGCTGCTCCTTTGTGa |
134.75 |
0.177319945 |
TA2-061921 |
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contig24210 |
10 |
96 |
146 |
TA1-198679 |
FALSE |
unmapped |
TTCCAACACAGAGCAGAAGCAGTCTTCAATGGCGATGACAGGACCTACATGTATGAAGTT |
EW2_R1P04_D05 |
GACTTGACAATGGTTTGACGGATCAGCTCGAATGGAAGGGAAACTTCACATTGTTAGTGAGACAGACGTCGTTGAAAATACGCAAAGAGATTGATGTCGAAACTGAGGAAAATAAGGTGAAGTGGTTATCTACCAATATGACCGGTTCCATTGATATCGTTGAAATGCACACAGACGATGTCGAATTAGATGGTATATTGGCGTTGATTGACTCGAATGACGTCATGAAAGCTGTCATTGACTGTTTCGATGATG |
14938.25 |
0.076728632 |
TA1-198679 |
157426093 |
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11 |
96 |
144 |
TA2-182260 |
FALSE |
unmapped |
TGATTGATTAAGCTTAGGCTTCACAGGTTATTTGATTGTGCCTATGATGATGCATTTGAC |
contig16012 |
GtCAAaTGCATCATCATAGGCACAATCAAATAACCTGTGAAGCCTAAGCTTAATCAATCATGTGCACATATAATATTtCAACACTAGAGAAaCAGTTAAGGTAAAaTGATTCTGTTTCTTAAAAACAGAAAaTCATTCCAACTTGCAAAATCATAAGCAAATACAATGATCTTCAGTGGCTTAATGAGAATCAAAGTAAAACAGTATATCTAACGCACATGTGGTGCAGAAGAAGCTGTGCAAGAAACCTAATTT |
3241.75 |
0.073661425 |
TA2-182260 |
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contig16012 |
12 |
96 |
142 |
TA1-027454 |
FALSE |
unmapped |
ACTAGAGCAGACTTTGACTTGGCTGAGATTGCAGTTGCTTACGCTGGGCTGTATGGCGAG |
SMcontig_58421 |
GACACAAGTACTTTGCCGAGAACCTACACAACGCTCTCAAGGGTCTGGGAACCGACGAGAGAACCGTCATAAGAACCCTCGTCACTAGAGCAGACTTTGACTTGGCTGAGATTGCAGTTGCTTACGCTGGGCTGTATGGCGAG |
355.5 |
0.202460007 |
TA1-027454 |
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SMcontig_58421 |
13 |
96 |
140 |
TA2-173449 |
FALSE |
unmapped |
TCGGCGAAAGATACGACGCTAAGTTGATTGAAACTCAGGATTATCCGGAGTTTGGTCAGA |
contig26578 |
tCTGACCAAACTCCGGATAATCCTGAGTTtCAATCAACTTAGCGTCGTATCTTTCGCCGAACAGTTCCACGAGCTTTGACATAGGTATGCTGAACGGAAaGTCTTGGTACACACTGTTGTCATAATCGTAGATCTCAATGAGATGAGCAGAATTGGCGGTTTTTAAAGAAGACATCAGGTCCAAGTAACGTGTCCTGTCTCCGGGATTGATGGCTCCGAGGCTGccccgatCCCAGACGGCGTCGAAGGAACCcT |
150 |
0.237829693 |
TA2-173449 |
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contig26578 |
14 |
96 |
138 |
TA2-156699 |
FALSE |
unmapped |
TACAGTGCGGATGAAAAACGAGCATTAACTAGATTTGACATCGAAGAGAGGAAAAACGAG |
contig00403 |
aTTATCTtAACTTCTcGTTTTTCCTCTCTTCGATGTCAAATCTAGTTAATGCTCGTTTTTCATCCGCACTGTAGATTTGGTTCTCCTTTCGTAGACGCACAGCTtCCACTC |
174 |
0.091594123 |
TA2-156699 |
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contig00403 |
15 |
96 |
136 |
TA2-068598 |
FALSE |
unmapped |
CACTTATATGGGTATGTTCTGTTTCATGCCATTGAGATGTGTATACTTGTAAAGACCGAT |
contig03272 |
ATCGGTCTTTACAagTATACACATCTCAAtGGCATGAAACAGAaCATACCcATATAAGTGACATACGTGTTCACACACAAGCGGAATTTAAATTAAACTGGtGGTCAACATTTTGCTTGTCTAaGaCGAAaaaCGTGAAGAACGTAAAtGTAaCAGAACcTg |
251.5 |
0.206491645 |
TA2-068598 |
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contig03272 |
16 |
96 |
134 |
TA2-174614 |
FALSE |
unmapped |
TCTACGCGAAAGGACTCAAGACTTTCACCATGGGCATCAATGAGTTTGCTGACATGAATC |
contig25517 |
aaTGAAGCCAGttCATCACGTTCAAGAATTCCGATTGATTCATGTCAGCAAACTCATTGATGCCCATGGTGAAAGTCTTGAGTCCTTtCGCGTAGAGTGCGTTGTTTTCCTTGATAGCTTtCAAGTTCTCAGCGAAGATTTtcTTCCGGGCTATTTCTtCATTCTGGTCTTCGAacGTTTTGCCGTAATtGGCcTtGAAGGCgtCCCATTCGCCTTCAAGTTcaGt |
172.75 |
0.11118497 |
TA2-174614 |
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contig25517 |
17 |
96 |
132 |
TA1-021292 |
FALSE |
unmapped |
ACAGAACCAGGTCGCCCTCAGCGCCAACAACCTGTGTGATATTCTGAAAGAGACGGTGGC |
SMcontig_19827 |
TCTCCTGCGAAGTAAATTCGTTATTCTTGCTGCACATAAACTCGTCTACATCGGCGACACGGTAACGCGGAATTCTGTCGAGTCGTCTGCACAGAACCAGGTCGCCCTCAGCGCCAACAACCTGTGTGATATTCTGAAAGAGACGGTGGCCGCGACGAA |
124 |
0.230368659 |
TA1-021292 |
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SMcontig_19827 |
18 |
96 |
130 |
TA2-028306 |
FALSE |
unmapped |
ACTATACAACATAGGTGTGTTTTACTTTGTCGCATACTGACATACTTACAATTTCGGTTC |
contig24457 |
GAACCGAAATTGTAAGTATGTCAGTATGCGACAAAGTAAAACACACCTATGTTGTATAGTACAATGCAGGTTTACAGTACAACTCACGAGGTTACACTGAAACATTTTGCAATTCAATTGTGCATGAAAAATAACG |
8967 |
0.050677801 |
TA2-028306 |
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contig24457 |
19 |
96 |
128 |
TA1-163235 |
FALSE |
unmapped |
TATCTCGATGGCTTTGACCGAGATGATCAGGAAGCTGAAGAAGATGAAGATGAGGGTGAA |
EW1_F2P20_D04 |
ACTTTTCAACTGCGAGGTGACAAATTTGGAAGGCTATCGTGAGAGTGTATTTGAACTTCTGAAGGATCTTCATTATCTCGATGGCTTTGACCGAGATGATCAGGAAGCTGAAGAAGATGAAGATGAGGGTGAAGATGGGTCAGAAGTCTCTGGTGAAGGAGAGAATGGCGACGAAGTAGTTGATGTTGATGATGAGGAAGACGATGACGACGAAGAAGACGATGATGAAGATGATGATGGTGAAGTTGGTCTGGC |
507.5 |
0.167912144 |
TA1-163235 |
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EW1_F2P20_D04 |
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20 |
96 |
126 |
TA2-094092 |
FALSE |
unmapped |
CTACGATGCGGAGGTGCCGAACATCTGGCGGAAGGTGTCCTGGCCTTCGTCTACAATCGG |
SMcontig_37854 |
GAAACCTTGTGGATTGAAGAAGCCCGTCATCCAGAAGACGTTGGGCCTCATCTCGTAGAGCCATTTCGAGAACTGATCGTTGCGTTCGAGTAGTTCCGTAAACCAGAATCCGATTGTAGACGAAGGCCAGGACACCTTCCGCCAGATGTTCGGCACCTCCGCATCGTAGATGTTGTC |
121.25 |
0.1488159 |
TA2-094092 |
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SMcontig_37854 |
Total number of rows: 15211
Table truncated, full table size 4970 Kbytes.
Supplementary data files not provided |
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