NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL9420 Query DataSets for GPL9420
Status Public on Oct 08, 2010
Title Agilent-021219 New15K60mer-EfetidaArray
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Eisenia fetida
Manufacturer Agilent
Manufacture protocol www.agilent.com
 
 
Submission date Oct 09, 2009
Last update date Oct 08, 2010
Contact name Natalie Barker
E-mail(s) natalie.d.barker@usace.army.mil
Organization name Engineer Research and Development Center
Street address 3909 Halls Ferry Rd.
City Vicksburg
State/province MS
ZIP/Postal code 39180
Country USA
 
Samples (368) GSM460705, GSM460706, GSM460707, GSM460708, GSM460709, GSM460710 
Series (2)
GSE18495 Discovery of biomarker genes form earthworm microarray data
GSE42866 Predicting HMX bioavailability using microarray gene expression data and regression modeling

Data table header descriptions
ID ID #
COL Column
ROW Row
Name Name
CONTROL_TYPE Control Type
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE 60mer probe Sequence
TargetID Target ID
TargetSequence Target Sequence
PMT400_Mean PMT400_Mean- value calculated from raw data
PMT400_CV PMT400_Coefficient of Variance- value calculated from raw data
ProbeName Probe Name
GI Target GenBank (gi number)
CLONE_ID Target GenBank (EST clone)
SPOT_ID spots without GI or CLONE_ID

Data table
ID COL ROW Name CONTROL_TYPE CHROMOSOMAL_LOCATION SEQUENCE TargetID TargetSequence PMT400_Mean PMT400_CV ProbeName GI CLONE_ID SPOT_ID
1 96 164 GE_BrightCorner GE_BrightCorner pos --GE_BrightCorner
2 96 162 DarkCorner DarkCorner pos --DarkCorner
3 96 160 DarkCorner DarkCorner pos --DarkCorner
4 96 158 TA2-190364 FALSE unmapped TGTGTATGTTGAAGAGTTCGGAGTTGCTTTCCAATTACTTAAGGCTCTCTGTTTCTAGAT contig24004 ATCtAgAAACAgaGAGCCTTAAGTAattGgAAaGCAACtccgaaCtCTtCAaCaTACACACAaCATATCCAGATCCAAATCTAGCATACACATTAACATCCAGGTAATTTCATTCATCCATCAAaCACAAAGTTCATAACTTTGTCCGGgCATGATTACCATTATTAGTTAGGACCGCTGTGGCCCAAACTAGATCCTTTGCAACCATTGGgCCcTCCcTTtGgAAT 699.75 0.124837611 TA2-190364 contig24004
5 96 156 TA2-068806 FALSE unmapped CACTTTGTTGGATGGACAGTTTCTGAATTTTCAAACATTCTGTGGATCAGTCATAAAATC contig11387 CTTATATAtGATTTTATGACTGATCCACAGAATGTTTGAAAATTCAGAAACTGTCCATCCAACAAAGTGCAAAAGTCTTTTGTACAGACTATCTCTTCTTGAATCCATATTTCTTCCTCTCATAGAAGAGGTCAGTCTTTGCACTGCCAAGATTCACTATCTTTGGACAACCATCTCTGTCTTTCTCTGTGaTtGTACATTCTTTGCAGTAGTAGGttCAT 240 0.154672593 TA2-068806 contig11387
6 96 154 TA1-236167 FALSE unmapped TGGTAAAGACCAGGAAAGGGAGAAGCCTCTTGGCAGATGTTGAAGTCAATTCCAACAAGA contig08196 CAATTGCGTAATCCAGGTGGCTGGTTtCCAGCAGCCGAGCCAGGTGGTAAAGACCAGGAAAGGGAGAAGCCTCTTGGCAGATGTtGAAGTCAATTCCAACAAGACGCTGAATCTGGCgCCAGAGTTCACCGACATGTATCCAGTCATCTTCAACATCATCCTTTGGACAATGATTGCCATTGCTCTGGCAATCTTTGCCATCTCTTGGGGaa 846.125 0.150986674 TA1-236167 contig08196
7 96 152 TA2-137549 FALSE unmapped GGTTGTTACTGTAACAGTAATTTATGACAGATGCTGACGTTAAATAATAGCACGAGTATC EW2_F1P02_H01 CGTCTTGGCCGAAATTCAGATTAGCACCTTGGATGCCAAAAAGATTGTAATTACTTAATTAAATTGATACTCGTGCTATTATTTAACGTCAGCATCTGTCATAAATTACTGTTACAGTAACAACCAGTTTGCACAAGTCCAACTGTCAACGTGT 706.75 0.190107763 TA2-137549 157425762
8 96 150 TA1-092414 FALSE unmapped CTAAGGGGTCATTGTTGGTATAAAGTGAGGTGTGAAATTCCTTTGTTGAGTTTGTTAAAT SMcontig_337 GTAATCATTGTGGTAATCTGTAAACTTAAAGAAACAAAACGGTAAGTAAACAAACTAAGTTAGACAAATTCGGCTTCTACGTAAATGTACAATAATTACATGTAGCAAAGGTACAGCGTATATTATGATGTTCTATTACAGATTAAGACTCATTTTCATATTTTTTCTTTTAATCTAAATTATGTGTTAATTCAAATAAGCATTATTGCCATCATCTTTTCTTGAAAGCCTTTGCTTTTTTTACTTACTAAAATG 505.5 0.107074966 TA1-092414 SMcontig_337
9 96 148 TA2-061921 FALSE unmapped CAAACGTAGGCCAAAAACTGCTTTAGAATAACGAACATTTTCGAATGAAATAAAGGCAAG contig24210 GTCcACCATATtAAGAAGAAGCTAAaGTATAGgTCTAATAAACTTGCCTTtATTTCATTCGAAAATGTTCGTTATTCTAAAGCAGTTTTTGGCCTACGTTTGTCTTTATCCATTTTATTGTTGCAGGATATTCGATAGCTTTAAGCCTGCATAGAAGTGGCTATTtCGTAATAAGGTGCCTAATTAATAGATTAATTAATAAAGGTTCGAGTAAGTAAAGCGAAATCATCGGCTGCTCCTTTGTGa 134.75 0.177319945 TA2-061921 contig24210
10 96 146 TA1-198679 FALSE unmapped TTCCAACACAGAGCAGAAGCAGTCTTCAATGGCGATGACAGGACCTACATGTATGAAGTT EW2_R1P04_D05 GACTTGACAATGGTTTGACGGATCAGCTCGAATGGAAGGGAAACTTCACATTGTTAGTGAGACAGACGTCGTTGAAAATACGCAAAGAGATTGATGTCGAAACTGAGGAAAATAAGGTGAAGTGGTTATCTACCAATATGACCGGTTCCATTGATATCGTTGAAATGCACACAGACGATGTCGAATTAGATGGTATATTGGCGTTGATTGACTCGAATGACGTCATGAAAGCTGTCATTGACTGTTTCGATGATG 14938.25 0.076728632 TA1-198679 157426093
11 96 144 TA2-182260 FALSE unmapped TGATTGATTAAGCTTAGGCTTCACAGGTTATTTGATTGTGCCTATGATGATGCATTTGAC contig16012 GtCAAaTGCATCATCATAGGCACAATCAAATAACCTGTGAAGCCTAAGCTTAATCAATCATGTGCACATATAATATTtCAACACTAGAGAAaCAGTTAAGGTAAAaTGATTCTGTTTCTTAAAAACAGAAAaTCATTCCAACTTGCAAAATCATAAGCAAATACAATGATCTTCAGTGGCTTAATGAGAATCAAAGTAAAACAGTATATCTAACGCACATGTGGTGCAGAAGAAGCTGTGCAAGAAACCTAATTT 3241.75 0.073661425 TA2-182260 contig16012
12 96 142 TA1-027454 FALSE unmapped ACTAGAGCAGACTTTGACTTGGCTGAGATTGCAGTTGCTTACGCTGGGCTGTATGGCGAG SMcontig_58421 GACACAAGTACTTTGCCGAGAACCTACACAACGCTCTCAAGGGTCTGGGAACCGACGAGAGAACCGTCATAAGAACCCTCGTCACTAGAGCAGACTTTGACTTGGCTGAGATTGCAGTTGCTTACGCTGGGCTGTATGGCGAG 355.5 0.202460007 TA1-027454 SMcontig_58421
13 96 140 TA2-173449 FALSE unmapped TCGGCGAAAGATACGACGCTAAGTTGATTGAAACTCAGGATTATCCGGAGTTTGGTCAGA contig26578 tCTGACCAAACTCCGGATAATCCTGAGTTtCAATCAACTTAGCGTCGTATCTTTCGCCGAACAGTTCCACGAGCTTTGACATAGGTATGCTGAACGGAAaGTCTTGGTACACACTGTTGTCATAATCGTAGATCTCAATGAGATGAGCAGAATTGGCGGTTTTTAAAGAAGACATCAGGTCCAAGTAACGTGTCCTGTCTCCGGGATTGATGGCTCCGAGGCTGccccgatCCCAGACGGCGTCGAAGGAACCcT 150 0.237829693 TA2-173449 contig26578
14 96 138 TA2-156699 FALSE unmapped TACAGTGCGGATGAAAAACGAGCATTAACTAGATTTGACATCGAAGAGAGGAAAAACGAG contig00403 aTTATCTtAACTTCTcGTTTTTCCTCTCTTCGATGTCAAATCTAGTTAATGCTCGTTTTTCATCCGCACTGTAGATTTGGTTCTCCTTTCGTAGACGCACAGCTtCCACTC 174 0.091594123 TA2-156699 contig00403
15 96 136 TA2-068598 FALSE unmapped CACTTATATGGGTATGTTCTGTTTCATGCCATTGAGATGTGTATACTTGTAAAGACCGAT contig03272 ATCGGTCTTTACAagTATACACATCTCAAtGGCATGAAACAGAaCATACCcATATAAGTGACATACGTGTTCACACACAAGCGGAATTTAAATTAAACTGGtGGTCAACATTTTGCTTGTCTAaGaCGAAaaaCGTGAAGAACGTAAAtGTAaCAGAACcTg 251.5 0.206491645 TA2-068598 contig03272
16 96 134 TA2-174614 FALSE unmapped TCTACGCGAAAGGACTCAAGACTTTCACCATGGGCATCAATGAGTTTGCTGACATGAATC contig25517 aaTGAAGCCAGttCATCACGTTCAAGAATTCCGATTGATTCATGTCAGCAAACTCATTGATGCCCATGGTGAAAGTCTTGAGTCCTTtCGCGTAGAGTGCGTTGTTTTCCTTGATAGCTTtCAAGTTCTCAGCGAAGATTTtcTTCCGGGCTATTTCTtCATTCTGGTCTTCGAacGTTTTGCCGTAATtGGCcTtGAAGGCgtCCCATTCGCCTTCAAGTTcaGt 172.75 0.11118497 TA2-174614 contig25517
17 96 132 TA1-021292 FALSE unmapped ACAGAACCAGGTCGCCCTCAGCGCCAACAACCTGTGTGATATTCTGAAAGAGACGGTGGC SMcontig_19827 TCTCCTGCGAAGTAAATTCGTTATTCTTGCTGCACATAAACTCGTCTACATCGGCGACACGGTAACGCGGAATTCTGTCGAGTCGTCTGCACAGAACCAGGTCGCCCTCAGCGCCAACAACCTGTGTGATATTCTGAAAGAGACGGTGGCCGCGACGAA 124 0.230368659 TA1-021292 SMcontig_19827
18 96 130 TA2-028306 FALSE unmapped ACTATACAACATAGGTGTGTTTTACTTTGTCGCATACTGACATACTTACAATTTCGGTTC contig24457 GAACCGAAATTGTAAGTATGTCAGTATGCGACAAAGTAAAACACACCTATGTTGTATAGTACAATGCAGGTTTACAGTACAACTCACGAGGTTACACTGAAACATTTTGCAATTCAATTGTGCATGAAAAATAACG 8967 0.050677801 TA2-028306 contig24457
19 96 128 TA1-163235 FALSE unmapped TATCTCGATGGCTTTGACCGAGATGATCAGGAAGCTGAAGAAGATGAAGATGAGGGTGAA EW1_F2P20_D04 ACTTTTCAACTGCGAGGTGACAAATTTGGAAGGCTATCGTGAGAGTGTATTTGAACTTCTGAAGGATCTTCATTATCTCGATGGCTTTGACCGAGATGATCAGGAAGCTGAAGAAGATGAAGATGAGGGTGAAGATGGGTCAGAAGTCTCTGGTGAAGGAGAGAATGGCGACGAAGTAGTTGATGTTGATGATGAGGAAGACGATGACGACGAAGAAGACGATGATGAAGATGATGATGGTGAAGTTGGTCTGGC 507.5 0.167912144 TA1-163235 EW1_F2P20_D04
20 96 126 TA2-094092 FALSE unmapped CTACGATGCGGAGGTGCCGAACATCTGGCGGAAGGTGTCCTGGCCTTCGTCTACAATCGG SMcontig_37854 GAAACCTTGTGGATTGAAGAAGCCCGTCATCCAGAAGACGTTGGGCCTCATCTCGTAGAGCCATTTCGAGAACTGATCGTTGCGTTCGAGTAGTTCCGTAAACCAGAATCCGATTGTAGACGAAGGCCAGGACACCTTCCGCCAGATGTTCGGCACCTCCGCATCGTAGATGTTGTC 121.25 0.1488159 TA2-094092 SMcontig_37854

Total number of rows: 15211

Table truncated, full table size 4970 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap