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Status
Public on Dec 01, 2010
Title
Multi-species 1.1K miRNA array
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organisms
Caenorhabditis elegans ; Drosophila melanogaster ; Danio rerio ; Homo sapiens ; Mus musculus ; Rattus norvegicus
Manufacturer
Biomedical Genomics Center Microarray Facility at the University of Minnesota
Manufacture protocol
A miRNA probe set was purchased from Invitrogen, which was designed based on the Sanger miRBase Sequence Database, Release 9.0. The set contains approximately 1,140 oligonucleotides of 34 to 44 nt long as probes. They are complementary to C. elegans, Drosophila, zebrafish, mouse, rat, and human miRNAs, and also include a number of internal and negative control probes. The oligonucleotides were dissolved in 3 x SSC and quadruply printed on CorningĀ® GAPSTM II coated slides using a BioRobotics Microgrid II spotter
Submission date
Nov 02, 2009
Last update date
Dec 01, 2010
Contact name
Xiaoxiao Zhang
E-mail(s)
zhang688@umn.edu
Organization name
University of Minnesota
Street address
312 Church St. SE
City
Minneapolis
ZIP/Postal code
55455
Country
USA
Samples (24)
GSM467092 , GSM467093 , GSM467094 , GSM467095 , GSM467096 , GSM467097
GSM467098 ,
GSM467099 ,
GSM467100 ,
GSM467101 ,
GSM467102 ,
GSM467103 ,
GSM467104 ,
GSM467105 ,
GSM467106 ,
GSM467107 ,
GSM467108 ,
GSM467109 ,
GSM541665 ,
GSM541666 ,
GSM541667 ,
GSM541668 ,
GSM541669 ,
GSM541670
Series (2)
GSE18847
microRNA expression and opioid regulation in the zebrafish
GSE21708
Regulation of Human Dendritic Cell Apoptosis and IL-12 Production by MiR-221and MiR-155 through targeting of p27kip1, KPC1 and SOCS1
Data table header descriptions
ID
Systematic Name
names of probes for microRNA or control RNAs
SEQUENCE
miRNA_LIST
SPOT_ID
Data table
ID
Systematic Name
SEQUENCE
miRNA_LIST
SPOT_ID
1
unknown
--unknown
2
rno-miR-7|ssc-miR-7|ggo-miR-7|ppy-miR-7|sla-miR-7|lla-miR-7|mne-miR-7|ppa-miR-7|ptr-miR-7|fru-miR-7
AACAAAATCACTAGTCTTCCAACAAAATCACTAGTCTTCC
rno-miR-7, ssc-miR-7, ggo-miR-7, ppy-miR-7, sla-miR-7, lla-miR-7, mne-miR-7, ppa-miR-7, ptr-miR-7, fru-miR-7
3
rno-miR-7*
TATGGCAGACTGTGATTTGTTGTATGGCAGACTGTGATTTGTTG
rno-miR-7*
4
rno-miR-664
TAGGCTGGGGAGTAAATGAATATAGGCTGGGGAGTAAATGAATA
rno-miR-664
5
rno-miR-542-3p
TTCAGTTATCAATCTGTCACTTCAGTTATCAATCTGTCAC
rno-miR-542-3p
6
rno-miR-505
GGAAACCAGCAAGTGTTGACGGAAACCAGCAAGTGTTGAC
rno-miR-505
7
rno-miR-501|mmu-miR-501
TTTCACCCAGGGACAAAGGATTTTTCACCCAGGGACAAAGGATT
rno-miR-501, mmu-miR-501
8
rno-miR-499|mmu-miR-499|bta-miR-499
AAACATCACTGCAAGTCTTAAAACATCACTGCAAGTCTTA
rno-miR-499, mmu-miR-499, bta-miR-499
9
rno-miR-497|mmu-miR-497
TACAAACCACAGTGTGCTGCTTACAAACCACAGTGTGCTGCT
rno-miR-497, mmu-miR-497
10
rno-miR-489
GCTGCCATATATGTGATGTCATGCTGCCATATATGTGATGTCAT
rno-miR-489
11
rno-miR-424|mmu-miR-424
TCCAAAACATGAATTGCTGCTGTCCAAAACATGAATTGCTGCTG
rno-miR-424, mmu-miR-424
12
rno-miR-422b
CCTTCTGACTCCAAGTCCAGTCCTTCTGACTCCAAGTCCAGT
rno-miR-422b
13
rno-miR-421
CAACAAACATTTAATGAGGCCCAACAAACATTTAATGAGGCC
rno-miR-421
14
rno-miR-409-5p
CAAAGTTGCTCGGGTAACCTCAAAGTTGCTCGGGTAACCT
rno-miR-409-5p
15
rno-miR-409-3p
GGGGTTCACCGAGCAACATTGGGGTTCACCGAGCAACATT
rno-miR-409-3p
16
rno-miR-382*
GAATCCACCACGAACAACTTCGAATCCACCACGAACAACTTC
rno-miR-382*
17
rno-miR-382
GAATCCACCACGAACAACTTCGAATCCACCACGAACAACTTC
rno-miR-382
18
rno-miR-381
GAGAGCTTGCCCTTGTATAGAGAGCTTGCCCTTGTATA
rno-miR-381
19
rno-miR-377
CCAAAAGTTGCCTTTGTGTGATCCAAAAGTTGCCTTTGTGTGAT
rno-miR-377
20
rno-miR-376b
AGTGGATGTTCCTCTATGATAGTGGATGTTCCTCTATGAT
rno-miR-376b
Total number of rows: 1147 Table truncated, full table size 119 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL9517_oligo_sequences.xls.gz
40.3 Kb
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XLS