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Platform GPL9517 Query DataSets for GPL9517
Status Public on Dec 01, 2010
Title Multi-species 1.1K miRNA array
Technology type spotted oligonucleotide
Distribution non-commercial
Organisms Caenorhabditis elegans; Drosophila melanogaster; Danio rerio; Homo sapiens; Mus musculus; Rattus norvegicus
Manufacturer Biomedical Genomics Center Microarray Facility at the University of Minnesota
Manufacture protocol A miRNA probe set was purchased from Invitrogen, which was designed based on the Sanger miRBase Sequence Database, Release 9.0. The set contains approximately 1,140 oligonucleotides of 34 to 44 nt long as probes. They are complementary to C. elegans, Drosophila, zebrafish, mouse, rat, and human miRNAs, and also include a number of internal and negative control probes. The oligonucleotides were dissolved in 3 x SSC and quadruply printed on CorningĀ® GAPSTM II coated slides using a BioRobotics Microgrid II spotter
 
 
Submission date Nov 02, 2009
Last update date Dec 01, 2010
Contact name Xiaoxiao Zhang
E-mail(s) zhang688@umn.edu
Organization name University of Minnesota
Street address 312 Church St. SE
City Minneapolis
ZIP/Postal code 55455
Country USA
 
Samples (24) GSM467092, GSM467093, GSM467094, GSM467095, GSM467096, GSM467097 
Series (2)
GSE18847 microRNA expression and opioid regulation in the zebrafish
GSE21708 Regulation of Human Dendritic Cell Apoptosis and IL-12 Production by MiR-221and MiR-155 through targeting of p27kip1, KPC1 and SOCS1

Data table header descriptions
ID
Systematic Name names of probes for microRNA or control RNAs
SEQUENCE
miRNA_LIST
SPOT_ID

Data table
ID Systematic Name SEQUENCE miRNA_LIST SPOT_ID
1 unknown --unknown
2 rno-miR-7|ssc-miR-7|ggo-miR-7|ppy-miR-7|sla-miR-7|lla-miR-7|mne-miR-7|ppa-miR-7|ptr-miR-7|fru-miR-7 AACAAAATCACTAGTCTTCCAACAAAATCACTAGTCTTCC rno-miR-7, ssc-miR-7, ggo-miR-7, ppy-miR-7, sla-miR-7, lla-miR-7, mne-miR-7, ppa-miR-7, ptr-miR-7, fru-miR-7
3 rno-miR-7* TATGGCAGACTGTGATTTGTTGTATGGCAGACTGTGATTTGTTG rno-miR-7*
4 rno-miR-664 TAGGCTGGGGAGTAAATGAATATAGGCTGGGGAGTAAATGAATA rno-miR-664
5 rno-miR-542-3p TTCAGTTATCAATCTGTCACTTCAGTTATCAATCTGTCAC rno-miR-542-3p
6 rno-miR-505 GGAAACCAGCAAGTGTTGACGGAAACCAGCAAGTGTTGAC rno-miR-505
7 rno-miR-501|mmu-miR-501 TTTCACCCAGGGACAAAGGATTTTTCACCCAGGGACAAAGGATT rno-miR-501, mmu-miR-501
8 rno-miR-499|mmu-miR-499|bta-miR-499 AAACATCACTGCAAGTCTTAAAACATCACTGCAAGTCTTA rno-miR-499, mmu-miR-499, bta-miR-499
9 rno-miR-497|mmu-miR-497 TACAAACCACAGTGTGCTGCTTACAAACCACAGTGTGCTGCT rno-miR-497, mmu-miR-497
10 rno-miR-489 GCTGCCATATATGTGATGTCATGCTGCCATATATGTGATGTCAT rno-miR-489
11 rno-miR-424|mmu-miR-424 TCCAAAACATGAATTGCTGCTGTCCAAAACATGAATTGCTGCTG rno-miR-424, mmu-miR-424
12 rno-miR-422b CCTTCTGACTCCAAGTCCAGTCCTTCTGACTCCAAGTCCAGT rno-miR-422b
13 rno-miR-421 CAACAAACATTTAATGAGGCCCAACAAACATTTAATGAGGCC rno-miR-421
14 rno-miR-409-5p CAAAGTTGCTCGGGTAACCTCAAAGTTGCTCGGGTAACCT rno-miR-409-5p
15 rno-miR-409-3p GGGGTTCACCGAGCAACATTGGGGTTCACCGAGCAACATT rno-miR-409-3p
16 rno-miR-382* GAATCCACCACGAACAACTTCGAATCCACCACGAACAACTTC rno-miR-382*
17 rno-miR-382 GAATCCACCACGAACAACTTCGAATCCACCACGAACAACTTC rno-miR-382
18 rno-miR-381 GAGAGCTTGCCCTTGTATAGAGAGCTTGCCCTTGTATA rno-miR-381
19 rno-miR-377 CCAAAAGTTGCCTTTGTGTGATCCAAAAGTTGCCTTTGTGTGAT rno-miR-377
20 rno-miR-376b AGTGGATGTTCCTCTATGATAGTGGATGTTCCTCTATGAT rno-miR-376b

Total number of rows: 1147

Table truncated, full table size 119 Kbytes.




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Supplementary file Size Download File type/resource
GPL9517_oligo_sequences.xls.gz 40.3 Kb (ftp)(http) XLS

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