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GEO help: Mouse over screen elements for information. |
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Status |
Public on Dec 01, 2009 |
Title |
Winzeler Lab Plasmodium tiling array (Pftilingb520509) |
Technology type |
in situ oligonucleotide |
Distribution |
custom-commercial |
Organism |
Plasmodium falciparum |
Manufacturer |
Affymetrix |
Manufacture protocol |
Whole genome tiling at 2-4 bp spacing, see manufacturer's website.
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Description |
The probe mapping has changed from the original Affymetrix design since the genome assembly has changed. Pftiling_chrprobes_v6.0 contains the probe mapping information relative to the new genome assembly. Pftiling_probeseqs.txt contains the probe sequence information, and the original .bpmap file from Affymetrix is also provided below.
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Web link |
http://www.scripps.edu/cb/winzeler/software/
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Submission date |
Nov 12, 2009 |
Last update date |
Dec 01, 2009 |
Contact name |
Elizabeth Ann Winzeler |
URL |
http://winzeler.ucsd.edu/index.html
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Organization name |
University of California San Diego
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Department |
Pediatrics
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Lab |
Winzeler
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Street address |
9500 Gilman Drive 0741
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City |
La Jolla |
State/province |
CA |
ZIP/Postal code |
92093-0741 |
Country |
USA |
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Samples (32)
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GSM469951, GSM469952, GSM469953, GSM469954, GSM469955, GSM469956
GSM564874, GSM564875, GSM564876, GSM564877, GSM564878, GSM564879, GSM564880, GSM564881, GSM564882, GSM564883, GSM564884, GSM564885, GSM564886, GSM564887, GSM564888, GSM564889, GSM689142, GSM689143, GSM689144, GSM689145, GSM803839, GSM803840, GSM803841, GSM803842, GSM803843, GSM803844
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Series (4)
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GSE18968 |
P. falciparum Histone Occupancy Mapping |
GSE22861 |
Genome-scanning of Amazonian Plasmodium falciparum shows subtelomeric instability and clindamycin resistant parasites |
GSE27907 |
Piperaquine Resistance is Associated with a Copy Number Variation on Chromosome 5 in Drug-Pressured Plasmodium falciparum Parasites |
GSE32485 |
Imaging of Plasmodium liver stages to drive next-generation antimalarial drug discovery |
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Supplementary file |
Size |
Download |
File type/resource |
GPL9610_Pftiling_chrprobes_v6.0.txt.gz |
32.4 Mb |
(ftp)(http) |
TXT |
GPL9610_Pftiling_probeseqs.txt.gz |
107.9 Mb |
(ftp)(http) |
TXT |
GPL9610_Pftiling_tile-3.bpmap.gz |
72.5 Mb |
(ftp)(http) |
BPMAP |
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