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Platform GPL9610 Query DataSets for GPL9610
Status Public on Dec 01, 2009
Title Winzeler Lab Plasmodium tiling array (Pftilingb520509)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Plasmodium falciparum
Manufacturer Affymetrix
Manufacture protocol Whole genome tiling at 2-4 bp spacing, see manufacturer's website.
 
Description The probe mapping has changed from the original Affymetrix design since the genome assembly has changed. Pftiling_chrprobes_v6.0 contains the probe mapping information relative to the new genome assembly. Pftiling_probeseqs.txt contains the probe sequence information, and the original .bpmap file from Affymetrix is also provided below.
 
Web link http://www.scripps.edu/cb/winzeler/software/
Submission date Nov 12, 2009
Last update date Dec 01, 2009
Contact name Elizabeth Ann Winzeler
URL http://winzeler.ucsd.edu/index.html
Organization name University of California San Diego
Department Pediatrics
Lab Winzeler
Street address 9500 Gilman Drive 0741
City La Jolla
State/province CA
ZIP/Postal code 92093-0741
Country USA
 
Samples (32) GSM469951, GSM469952, GSM469953, GSM469954, GSM469955, GSM469956 
Series (4)
GSE18968 P. falciparum Histone Occupancy Mapping
GSE22861 Genome-scanning of Amazonian Plasmodium falciparum shows subtelomeric instability and clindamycin resistant parasites
GSE27907 Piperaquine Resistance is Associated with a Copy Number Variation on Chromosome 5 in Drug-Pressured Plasmodium falciparum Parasites

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL9610_Pftiling_chrprobes_v6.0.txt.gz 32.4 Mb (ftp)(http) TXT
GPL9610_Pftiling_probeseqs.txt.gz 107.9 Mb (ftp)(http) TXT
GPL9610_Pftiling_tile-3.bpmap.gz 72.5 Mb (ftp)(http) BPMAP

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