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Platform GPL9777 Query DataSets for GPL9777
Status Public on Dec 10, 2009
Title Agilent-021850 SurePrint G3 Human CGH Microarray (Feature Number version)
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description SurePrint G3 Human CGH Microarray 2x400K

Arrays of this design have barcodes that begin with 16021850 or 2521850.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL887.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL19387.
 
Submission date Dec 10, 2009
Last update date Mar 21, 2017
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (620) GSM691541, GSM691542, GSM691543, GSM691544, GSM691545, GSM691546 
Series (36)
GSE27965 CNVs in spermatogenic failure
GSE28676 Molecular characterization of two unrelated patients ABCB4 deletions
GSE34063 Clonal Analysis for Identification of Molecular Pathways with Potential Therapeutic Implications in of Rare Gastrointestinal and Endocrine Cancers
Relations
Alternative to GPL19387

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBank Accession number
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION
1 528 796 HsCGHBrightCorner pos
2 528 794 DarkCorner pos
3 528 792 DarkCorner pos
4 528 790 A_16_P17991140 FALSE NM_012301 MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 ref|NM_012301 chr7:77827408-77827467 hs|q21.11 Homo sapiens membrane associated guanylate kinase, WW and PDZ domain containing 2 (MAGI2), mRNA.
5 528 788 A_16_P33811607 FALSE NM_207112 HAGHL hydroxyacylglutathione hydrolase-like ref|NM_207112|ref|NM_032304 chr16:718810-718854 hs|p13.3 Homo sapiens hydroxyacylglutathione hydrolase-like (HAGHL), transcript variant 1, mRNA.
6 528 786 A_16_P21504511 FALSE chrX:80682974-80683033 hs|q21.1
7 528 784 A_16_P35765557 FALSE chr2:88227682-88227738 hs|p11.2
8 528 782 A_18_P22657524 FALSE NM_001135774 SYN3 synapsin III ref|NM_001135774 chr22:31775488-31775547 hs|q12.3 Homo sapiens synapsin III (SYN3), transcript variant IIIg, mRNA.
9 528 780 A_16_P16173769 FALSE NM_014483 RBMS3 RNA binding motif, single stranded interacting protein ref|NM_014483|ref|NM_001003792|ref|NM_001003793 chr3:29899030-29899089 hs|p24.1 Homo sapiens RNA binding motif, single stranded interacting protein (RBMS3), transcript variant 2, mRNA.
10 528 778 A_16_P20508688 FALSE chr16:68351412-68351471 hs|q22.1
11 528 776 A_16_P17090144 FALSE NM_015384 NIPBL Nipped-B homolog (Drosophila) ref|NM_015384|ref|NM_133433 chr5:36969564-36969623 hs|p13.2 Homo sapiens Nipped-B homolog (Drosophila) (NIPBL), transcript variant B, mRNA.
12 528 774 A_16_P20531565 FALSE NM_016373 WWOX WW domain containing oxidoreductase ref|NM_016373 chr16:77655632-77655691 hs|q23.1 Homo sapiens WW domain containing oxidoreductase (WWOX), transcript variant 1, mRNA.
13 528 772 A_16_P38660011 FALSE NM_173550 C9orf93 chromosome 9 open reading frame 93 ref|NM_173550 chr9:15605655-15605714 hs|p22.3 Homo sapiens chromosome 9 open reading frame 93 (C9orf93), mRNA.
14 528 770 A_18_P13399885 FALSE chr2:132055046-132055105 hs|q21.1
15 528 768 A_18_P10796304 FALSE NR_026592 BMS1P4 BMS1 pseudogene 4 ref|NR_026592 chr10:75153837-75153889 hs|q22.2 Homo sapiens BMS1 pseudogene 4 (BMS1P4), non-coding RNA.
16 528 766 A_16_P03203060 FALSE chr17:2617550-2617609 hs|p13.3
17 528 764 A_16_P03779402 FALSE chrX:137510102-137510161 hs|q26.3
18 528 762 A_14_P137194 FALSE NR_026935 LOC158696 hypothetical LOC158696 ref|NR_026935 chrX:137525298-137525357 hs|q26.3 Homo sapiens hypothetical LOC158696 (LOC158696), non-coding RNA.
19 528 760 A_18_P14055431 FALSE NM_000844 GRM7 glutamate receptor, metabotropic 7 ref|NM_000844|ref|NM_181874 chr3:7130923-7130982 hs|p26.1 Homo sapiens glutamate receptor, metabotropic 7 (GRM7), transcript variant 1, mRNA.
20 528 758 A_16_P15776094 FALSE AK056906 gb|AK056906 chr2:108317426-108317485 hs|q12.3 Homo sapiens cDNA FLJ32344 fis, clone PROST2006450, moderately similar to N-HYDROXYARYLAMINE SULFOTRANSFERASE (EC 2.8.2.-).

Total number of rows: 420288

Table truncated, full table size 66477 Kbytes.




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