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Platform GPL9777

Query DataSets for GPL9777

Status

Public on Dec 10, 2009

Title

Agilent-021850 SurePrint G3 Human CGH Microarray (Feature Number version)

Technology type

in situ oligonucleotide

Distribution

commercial

Organism

Homo sapiens

Manufacturer

Agilent Technologies

Manufacture protocol

see manufacturer's web site at http://www.agilent.com/

Description

SurePrint G3 Human CGH Microarray 2x400K

Arrays of this design have barcodes that begin with 16021850 or 2521850.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL887.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL19387.

Submission date

Dec 10, 2009

Last update date

Mar 21, 2017

Organization

Agilent Technologies

E-mail(s)

cag_sales-na@agilent.com

Phone

877-424-4536

URL

http://www.agilent.com

Department

Street address

City

Palo Alto

State/province

ZIP/Postal code

94304

Country

USA

Samples (628)

More...

GSM691541, GSM691542, GSM691543, GSM691544, GSM691545, GSM691546

Series (37)

More...

GSE27965	CNVs in spermatogenic failure
GSE28676	Molecular characterization of two unrelated patients ABCB4 deletions
GSE34063	Clonal Analysis for Identification of Molecular Pathways with Potential Therapeutic Implications in of Rare Gastrointestinal and Endocrine Cancers

GSE38946	Array-based Comparative Genomic Hybridization of Melanoma Cell Lines
GSE40299	Deep Clonal Profiling of Formalin-Fixed Paraffin-Embedded Clinical Samples
GSE41356	Distribution of segmental duplications in the context of higher order chromatin organisation of human chromosome 7
GSE47701	Whole Genome Analysis of a Well-Differentiated Liposarcoma Reveals Novel SYT1 and DDR2 Rearrangements
GSE49324	Identification of neural stem cell gene expression signatures associated with disease progression in alveolar soft part sarcoma by integrated molecular profiling [aCGH]
GSE49327	Identification of neural stem cell gene expression signatures associated with disease progression in alveolar soft part sarcoma by integrated molecular profiling
GSE49430	Human BRAF-V600E melanoma cell lines drug sensitive vs drug resistant
GSE54328	STAG2 is a clinically relevant tumor suppressor in pancreatic ductal adenocarcinoma
GSE55645	Genome wide analysis of copy number variation in NAFLD spectrum
GSE58000	Array CGH of cutaneous neurofibromas (cNFs) from NF1 patients
GSE59239	Acquired resistance to mutant-selective EGFR inhibitor AZD9291 is associated with increased dependence on RAS signaling
GSE64462	Phase II study of therapy selected by tumor molecular profiling in patients with previously treated metastatic pancreatic cancer. A study of the Stand Up to Cancer (SU2C) study consortium
GSE66337	X-CGD iPS cells before and after genome editing by designer nucleases
GSE67938	Germline duplication of ATG2B and GSKIP predisposes to familial essential thrombocythemia rapidly progressing to acute leukemia
GSE72750	The methylome of Alu repeats in colon cancer (CGH)
GSE72751	The methylome of Alu repeats in colon cancer
GSE73899	Copy number analysis in melanoma tumor samples from E2603
GSE85701	Identification of rare copy number polymorphic gains at 3q12.2 and 19q13.2 identifies candidate genes for familial endometriosis
GSE96904	Comprehensive performance comparison of high-resolution array platforms for genome-wide Copy Number Variation (CNV) analysis in humans [Agilent021850]
GSE96909	Comprehensive performance comparison of high-resolution array platforms for genome-wide Copy Number Variation (CNV) analysis in humans
GSE97334	CNA analysis of ionizing radiation related basal cell carcinoma
GSE98307	Regional preferences of DNA methylation changes in response to X-ray-irradiation [Agilent-021850 array]
GSE98308	Regional preferences of DNA methylation changes in response to X-ray-irradiation
GSE108203	Tumor evolution in the context of castration resistance in prostate cancer
GSE126367	Copy number analysis of selumetinib-resistant CRC cells lines
GSE132473	Array comparative genomic hybridization (CGH) analysis of ameloblastoma tumor
GSE132474	Gene expression profiling and aCGH of ameloblastoma tumor
GSE137959	Copy-Number abberation profiles of glioma patient tissue samples and corresponding xenografted tumor samples as well as cell lines derived there-of
GSE153314	SMAD4 haploinsufficiency in small intestinal neuroendocrine tumors
GSE162645	Genomic adaptation and mutational patterns in a HaCaT subline resistant to alkylating agents and ionizing radiation [aCGH]
GSE162646	Genomic adaptation and mutational patterns in a HaCaT subline resistant to alkylating agents and ionizing radiation
GSE182312	Elevated enhancer-oncogene contacts and higher oncogene expression levels by recurrent CTCF inactivating mutations in acute T cell leukemia [Array CGH]
GSE182317	Elevated enhancer-oncogene contacts and higher oncogene expression levels by recurrent CTCF inactivating mutations in acute T cell leukemia
GSE268921	Single Nucleus DNA Sequencing of Flow Sorted Archived Frozen and Formalin Fixed Paraffin Embedded Solid Tumors

Relations

Alternative to

GPL19387

Data table header descriptions
ID	Agilent feature number
COL	Column
ROW	Row
SPOT_ID	Spot identifier
CONTROL_TYPE	Control type
GB_ACC	GenBank Accession number
GENE_SYMBOL	Gene Symbol
GENE_NAME	Gene Name
ACCESSION_STRING	Accession String
CHROMOSOMAL_LOCATION	Chromosomal Location
CYTOBAND	Cytoband
DESCRIPTION	Description

Data table
ID	COL	ROW	SPOT_ID	CONTROL_TYPE	GB_ACC	GENE_SYMBOL	GENE_NAME	ACCESSION_STRING	CHROMOSOMAL_LOCATION	CYTOBAND	DESCRIPTION
1	528	796	HsCGHBrightCorner	pos
2	528	794	DarkCorner	pos
3	528	792	DarkCorner	pos
4	528	790	A_16_P17991140	FALSE	NM_012301	MAGI2	membrane associated guanylate kinase, WW and PDZ domain containing 2	ref\|NM_012301	chr7:77827408-77827467	hs\|q21.11	Homo sapiens membrane associated guanylate kinase, WW and PDZ domain containing 2 (MAGI2), mRNA.
5	528	788	A_16_P33811607	FALSE	NM_207112	HAGHL	hydroxyacylglutathione hydrolase-like	ref\|NM_207112\|ref\|NM_032304	chr16:718810-718854	hs\|p13.3	Homo sapiens hydroxyacylglutathione hydrolase-like (HAGHL), transcript variant 1, mRNA.
6	528	786	A_16_P21504511	FALSE					chrX:80682974-80683033	hs\|q21.1
7	528	784	A_16_P35765557	FALSE					chr2:88227682-88227738	hs\|p11.2
8	528	782	A_18_P22657524	FALSE	NM_001135774	SYN3	synapsin III	ref\|NM_001135774	chr22:31775488-31775547	hs\|q12.3	Homo sapiens synapsin III (SYN3), transcript variant IIIg, mRNA.
9	528	780	A_16_P16173769	FALSE	NM_014483	RBMS3	RNA binding motif, single stranded interacting protein	ref\|NM_014483\|ref\|NM_001003792\|ref\|NM_001003793	chr3:29899030-29899089	hs\|p24.1	Homo sapiens RNA binding motif, single stranded interacting protein (RBMS3), transcript variant 2, mRNA.
10	528	778	A_16_P20508688	FALSE					chr16:68351412-68351471	hs\|q22.1
11	528	776	A_16_P17090144	FALSE	NM_015384	NIPBL	Nipped-B homolog (Drosophila)	ref\|NM_015384\|ref\|NM_133433	chr5:36969564-36969623	hs\|p13.2	Homo sapiens Nipped-B homolog (Drosophila) (NIPBL), transcript variant B, mRNA.
12	528	774	A_16_P20531565	FALSE	NM_016373	WWOX	WW domain containing oxidoreductase	ref\|NM_016373	chr16:77655632-77655691	hs\|q23.1	Homo sapiens WW domain containing oxidoreductase (WWOX), transcript variant 1, mRNA.
13	528	772	A_16_P38660011	FALSE	NM_173550	C9orf93	chromosome 9 open reading frame 93	ref\|NM_173550	chr9:15605655-15605714	hs\|p22.3	Homo sapiens chromosome 9 open reading frame 93 (C9orf93), mRNA.
14	528	770	A_18_P13399885	FALSE					chr2:132055046-132055105	hs\|q21.1
15	528	768	A_18_P10796304	FALSE	NR_026592	BMS1P4	BMS1 pseudogene 4	ref\|NR_026592	chr10:75153837-75153889	hs\|q22.2	Homo sapiens BMS1 pseudogene 4 (BMS1P4), non-coding RNA.
16	528	766	A_16_P03203060	FALSE					chr17:2617550-2617609	hs\|p13.3
17	528	764	A_16_P03779402	FALSE					chrX:137510102-137510161	hs\|q26.3
18	528	762	A_14_P137194	FALSE	NR_026935	LOC158696	hypothetical LOC158696	ref\|NR_026935	chrX:137525298-137525357	hs\|q26.3	Homo sapiens hypothetical LOC158696 (LOC158696), non-coding RNA.
19	528	760	A_18_P14055431	FALSE	NM_000844	GRM7	glutamate receptor, metabotropic 7	ref\|NM_000844\|ref\|NM_181874	chr3:7130923-7130982	hs\|p26.1	Homo sapiens glutamate receptor, metabotropic 7 (GRM7), transcript variant 1, mRNA.
20	528	758	A_16_P15776094	FALSE	AK056906			gb\|AK056906	chr2:108317426-108317485	hs\|q12.3	Homo sapiens cDNA FLJ32344 fis, clone PROST2006450, moderately similar to N-HYDROXYARYLAMINE SULFOTRANSFERASE (EC 2.8.2.-).

Total number of rows: 420288

Table truncated, full table size 66477 Kbytes.

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