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Platform GPL9899 Query DataSets for GPL9899
Status Public on Jul 29, 2010
Title NimbleGen Mouse 2006-08-03_MM8_60mer_expr tiling design
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer NimbleGen Systems Inc.
Manufacture protocol http://www.nimblegen.com
Catalog number Mouse 385k, A4543-00-01
 
Description Expression tiling array using NimbleGen platform. Mouse MM8 build (NCBI Build 36), 60mer probes, 9 probes/target, 42,586 gene targets.
 
Web link http://www.nimblegen.com/products/exp/eukaryotic.html
Submission date Jan 11, 2010
Last update date Jul 29, 2010
Contact name Jorja Henikoff
E-mail(s) jorja@fhcrc.org
Phone 206-667-4850
Organization name Fred Hutchinson Cancer Research Center
Department Basic Sciences
Lab Henikoff
Street address 1100 Fairview AV N, A1-162
City Seattle
State/province WA
ZIP/Postal code 98109-1024
Country USA
 
Samples (38) GSM497102, GSM497103, GSM497106, GSM497107, GSM497111, GSM497113 
Series (4)
GSE19884 Changes in H2A.Z occupancy and DNA methylation during B-cell lymphomagenesis
GSE36502 LmnaN195K Mouse Model
GSE40494 TGF-beta/Smad3-dependent gene expression analysis in naive CD4 T cells

Data table header descriptions
ID NimbleGen PROBE_ID
CHR Chromosome
RANGE_GB Accession.version of GENE
RANGE_START Start position of the probe within GENE
RANGE_END End position of the probe within GENE
SEQUENCE DNA sequence synthesized on the array
CHR_ACC RefSeq accession.version of chromosome in MM8
GENE_START GENE start position in MM8 coordinates
GENE_END GENE end position in MM8 coordinates
GENE_NAME GENE name in MM8 annotation
GB_ACC GenBank or RefSeq accession.version of GENE
SEQ_ID NimbleGen SEQ_ID
SPOT_ID

Data table
ID CHR RANGE_GB RANGE_START RANGE_END SEQUENCE CHR_ACC GENE_START GENE_END GENE_NAME GB_ACC SEQ_ID SPOT_ID
AB001539P00497 chr7 AB001539.1 497 556 TCAGCTGGAACTGGCCATGGTTCCTCACTACGGTGGCATCAACCGAGTTCGGGTATCTTG NC_000073.4 45693273 45698986 Grwd1 AB001539.1 AB001539
AB001539P00729 chr7 AB001539.1 729 788 GGCTTTGCTCTTGACTGGTCCCCTCGGGTGCCCGGCCGCTTGCTGACTGGTGACTGTCAG NC_000073.4 45693273 45698986 Grwd1 AB001539.1 AB001539
AB001539P01080 chr7 AB001539.1 1080 1139 GTCTGGGACCTGCGACAGTTTAAGTCTGGCTCCCCTGTGGCCACCTTCAAGCAACATATG NC_000073.4 45693273 45698986 Grwd1 AB001539.1 AB001539
AB001539P01447 chr7 AB001539.1 1447 1506 TTGGCTCCACATGGGAACTGGATCGGTTAACTTGGCAAGGATCATTAGGCCTGTAGACTG NC_000073.4 45693273 45698986 Grwd1 AB001539.1 AB001539
AB001539P01450 chr7 AB001539.1 1450 1509 GCTCCACATGGGAACTGGATCGGTTAACTTGGCAAGGATCATTAGGCCTGTAGACTGCAC NC_000073.4 45693273 45698986 Grwd1 AB001539.1 AB001539
AB001539P01452 chr7 AB001539.1 1452 1511 TCCACATGGGAACTGGATCGGTTAACTTGGCAAGGATCATTAGGCCTGTAGACTGCACCT NC_000073.4 45693273 45698986 Grwd1 AB001539.1 AB001539
AB001539P01453 chr7 AB001539.1 1453 1512 CCACATGGGAACTGGATCGGTTAACTTGGCAAGGATCATTAGGCCTGTAGACTGCACCTC NC_000073.4 45693273 45698986 Grwd1 AB001539.1 AB001539
AB001539P01455 chr7 AB001539.1 1455 1514 ACATGGGAACTGGATCGGTTAACTTGGCAAGGATCATTAGGCCTGTAGACTGCACCTCAG NC_000073.4 45693273 45698986 Grwd1 AB001539.1 AB001539
AB001539P01458 chr7 AB001539.1 1458 1517 TGGGAACTGGATCGGTTAACTTGGCAAGGATCATTAGGCCTGTAGACTGCACCTCAGGAA NC_000073.4 45693273 45698986 Grwd1 AB001539.1 AB001539
AB001926P01378 chr3 AB001926.1 1378 1437 GCATGAAGTGCCTTATCCTGATCCAAGAATTGGAAACTTCACTATTCAGAATGTTTTCCC NC_000069.4 40842416 40886129 Hspa4l AB001926.1 AB001926
AB001926P01468 chr3 AB001926.1 1468 1527 AGTTAAAGTTCGTATTAATATCCATGGAATCTTCAGTGTGGCCAGTGCGTCAGTAATTGA NC_000069.4 40842416 40886129 Hspa4l AB001926.1 AB001926
AB001926P01535 chr3 AB001926.1 1535 1594 AATCTGGAAGGTGATCATAACGATGCCGCTATGGAGACGGAAGCTCCTAAGAGTGAAGGC NC_000069.4 40842416 40886129 Hspa4l AB001926.1 AB001926
AB001926P01771 chr3 AB001926.1 1771 1830 TGATCTACCTATCCAGAGTAGCCTCTACAGACAGCTGACTCAAGACCTTCTCAATAGTTA NC_000069.4 40842416 40886129 Hspa4l AB001926.1 AB001926
AB001926P01899 chr3 AB001926.1 1899 1958 CTGTTGAAGAATACGTCTATGATTTCAGAGACAAATTGGGCACTGTCTACGAAAAGTTCA NC_000069.4 40842416 40886129 Hspa4l AB001926.1 AB001926
AB001926P01922 chr3 AB001926.1 1922 1981 TTCAGAGACAAATTGGGCACTGTCTACGAAAAGTTCATCACTCCAGAAGACATGAATAAG NC_000069.4 40842416 40886129 Hspa4l AB001926.1 AB001926
AB001926P02016 chr3 AB001926.1 2016 2075 TGTATGAAGAAGGAGAAGACCAGCCTAAACAAGTTTATGTGGATAGGCTGCAGGAATTAA NC_000069.4 40842416 40886129 Hspa4l AB001926.1 AB001926
AB001926P02237 chr3 AB001926.1 2237 2296 AGAGTTGAAAAGTACATCAGTGACTCCATGAACTGGCTAAACAGTAAGATGAATGCACAG NC_000069.4 40842416 40886129 Hspa4l AB001926.1 AB001926
AB001926P02511 chr3 AB001926.1 2511 2570 CACAGCACACCGACTCCGGAGAGATGGAAGTGGACTAAGTGTCATGTTATCCAAGCAGTG NC_000069.4 40842416 40886129 Hspa4l AB001926.1 AB001926
AB003147P00738 chr2 AB003147.1 738 797 CCAGACCACGGCCCTGGAACAAGCTATTAAGCATGCTCATGAGTGTTACGATGAGGAGCT NC_000068.5 143517966 143554384 Bfsp1 AB003147.1 AB003147
AB003147P00766 chr2 AB003147.1 766 825 AAGCATGCTCATGAGTGTTACGATGAGGAGCTACAGCTTTACAACGAGCAGATCGAAAAC NC_000068.5 143517966 143554384 Bfsp1 AB003147.1 AB003147

Total number of rows: 389307

Table truncated, full table size 60568 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL9899_2006-08-03_MM8_60mer_expr.gff.gz 2.5 Mb (ftp)(http) GFF
GPL9899_2006-08-03_MM8_60mer_expr.ndf.gz 23.6 Mb (ftp)(http) NDF
GPL9899_2006-08-03_MM8_60mer_expr.ngd.gz 2.7 Mb (ftp)(http) NGD

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