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Series GSE100100 Query DataSets for GSE100100
Status Public on May 31, 2018
Title A data mining paradigm for identifying key factors in biological processes using gene expression data
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary RNA-Seq was performed on the mouse keratinocyte cultures with Sbsn knockeddown to study the role of Sbsn in the regulation of epidermis devleopment.
Overall design The RNA-Seq was performed on mouse keratinocyte cultures with three treatments (no siRNA treated, siControl treated and siSbsn treated) of high calcium concentration. Two batches of replicates were generated for each condition. batch 1 has two replicates for each of the three conditions, and batch2 has three replicates for two conditions (siControl and siSbsn). The comparison between siSbsn vs siControl was performed to identify the differentially expressed genes.
Contributor(s) Li J, Zheng L, Uchiyama A, Bin L, Mauro TM, Elias PM, Pawelczyk T, Sakowicz-Burkiewicz M, Trzeciak M, Leung DY, Morasso MI, Yu P
Citation(s) 29899432
Submission date Jun 16, 2017
Last update date May 15, 2019
Contact name Maria I. Morasso
Phone 301-402-2888
Organization name National Institutes of Health
Department National Institute for Arthritis and Musculoskeletal and Skin Diseases
Lab Laboratory of Skin Biology
Street address Building 50, Room 1525 10 Center Drive
City Bethesda
State/province MD
ZIP/Postal code 20814
Country USA
Platforms (1)
GPL21493 Illumina HiSeq 3000 (Mus musculus)
Samples (12)
GSM2671305 N_H1
GSM2671306 N_H2
GSM2671307 C_H1
BioProject PRJNA390718
SRA SRP109348

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE100100_Sbsn_GeneCountTable.txt.gz 694.3 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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