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Series GSE100298 Query DataSets for GSE100298
Status Public on Jan 22, 2018
Title Dyw2-DYW2_OTP100: Identification of the transcriptome defects (nuclear and organelles) of the T-DNA KO mutants of DYW2 and OTP100
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary ngs2016_08_dyw2-dyw2-Identification of the transcriptome defects (nuclear and organelles) of the T-DNA KO mutants of DYW2 and OTP100-TheT-DNA KO mutations are embryo-ethal for DYW2 and OTP100 so the homozygous mutants were produced by a temporal embryo-specific complementation using the promoter of ABI3. The resulting homozygous mutants were compared to their WT siblings. The T-DNA lines were GK_332A07 for DYW2 and SAIL_784_A11 for OTP100
 
Overall design 12 samples with 3 biological replicats. gene knock out
 
Contributor(s) Alaunay A, Soubigou-Taconnat L, Delannoy E
Citation(s) 28760958
Submission date Jun 21, 2017
Last update date Jul 25, 2021
Contact name VĂ©ronique BRUNAUD
E-mail(s) veronique.brunaud@inrae.fr
Organization name INRA - CNRS - UPSUD
Lab IPS2
Street address rue Noetzlin
City Gif-sur-Yvette
ZIP/Postal code 91190
Country France
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (12)
GSM2677518 dyw2_HE_1
GSM2677519 dyw2_HE_2
GSM2677520 dyw2_HE_3
Relations
BioProject PRJNA391284
SRA SRP110017

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE100298_RAW.tar 2.5 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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