NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE100642 Query DataSets for GSE100642
Status Public on Jul 04, 2017
Title 12plex-wheat_2012-05-The wheat grain transcriptome response to high temperature
Organism Triticum aestivum
Experiment type Expression profiling by array
Summary 12plex_wheat_2012-05 - 12plex-wheat_2012-05 - The objective is to better understand the adaptive response of the wheat plant to an elevated mean temperature. Besides the morphological and ecophysiological responses, the changes in the expression of genes are investigated. Two genotypes (SxB49 and SxB139) are subjected to two different temperature regimes during the lag-phase of the developing grains. The profiling of the accumulation of gene transcripts throughout 12 developmental stages is carried out using a custom-designed 12x135K Roche NimbleGen gene expression microarray comprising the most recent NCBI wheat contig assembly and annotation (about 45 000 unigenes). This should permit both the identification of differentially expressed genes after heat treatment and the comparison of the behaviours of two wheat genotypes (SxB139 and SxB49). - The effect of the temperature on the expression of genes along with the effect of genotype
 
Overall design 48 dye-swap - genotype comparaison,treated vs untreated comparison
Web link http://urgv.evry.inra.fr/cgi-bin/projects/CATdb/consult_expce.pl?experiment_id=525
 
Contributor(s) Taconnat L, Mouzeyar S, Bouzidi F, Balzergue S, Martin-Magniette M
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jun 29, 2017
Last update date Jul 25, 2021
Contact name Soubigou-Taconnat Ludivine
E-mail(s) soubigou@evry.inra.fr
Organization name INRA
Department URGV
Lab ADT
Street address 2 rue gaston crémieux
City evry
ZIP/Postal code 91000
Country France
 
Platforms (1)
GPL23639 NimbleGen Triticum aestivum array [110121_Taestivum-HD12; gene-level]
Samples (94)
GSM2690060 549418A01 - SXB139_25 vs SXB139_28
GSM2690061 549418A02 - SXB139_28 vs SXB139_25
GSM2690062 549418A03 - SXB139_26 vs SXB139_27
Relations
BioProject PRJNA392964

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE100642_RAW.tar 395.4 Mb (http)(custom) TAR (of PAIR)
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap