|
| Status |
Public on Jun 06, 2018 |
| Title |
RNAseq analysis of latex samples from healthy and Tapping Panel Dryness-affected trees. |
| Organism |
Hevea brasiliensis |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
ngs2014_07_hevea-hevea_tpd-seq-RNAseq analysis of latex samples from healthy and Tapping Panel Dryness-affected trees.-Identification of Tapping Panel Dryness (TPD)-affected trees in a polyclonal trials grown under standard condition. Trees were tapped since November 2010 every 2 days. Latex yield and TPD occurrence were monitored as well as latex RNA samples were collected twice a year for further analysis. At the end of the experiment, gene expression in latex of healthy and TPD trees were compared.
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| |
|
| Overall design |
21 samples with 3 biological replicates. genotype comparison, normal vs disease comparison
|
| Web link |
http://tools.ips2.u-psud.fr/CATdb
|
| |
|
| Contributor(s) |
Montoro P, Taconnat L, Balzergue S |
| Citation(s) |
29855601 |
| |
| Submission date |
Jul 18, 2017 |
| Last update date |
Jul 25, 2021 |
| Contact name |
Véronique BRUNAUD |
| E-mail(s) |
veronique.brunaud@inrae.fr
|
| Organization name |
INRA - CNRS - UPSUD
|
| Lab |
IPS2
|
| Street address |
rue Noetzlin
|
| City |
Gif-sur-Yvette |
| ZIP/Postal code |
91190 |
| Country |
France |
| |
|
| Platforms (1) |
| GPL11409 |
Illumina HiSeq 2000 (Hevea brasiliensis) |
|
| Samples (21)
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|
| Relations |
| BioProject |
PRJNA394848 |
| SRA |
SRP112717 |
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