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Series GSE102126 Query DataSets for GSE102126
Status Public on Aug 15, 2017
Title Whole-genome resequencing of T-DNA insertion lines
Organism Arabidopsis thaliana
Experiment type Other
Summary Whole-genome resequencing of eight transcription factor mutants and one wild-type, in order to verify the T-DNA insertion site and its uniqueness.
 
Overall design Nextera whole-genome library and paired-end sequencing, to find the T-DNA insertion site(s)
 
Contributor(s) Narsai R, Gouil Q
Citation(s) 28911330
Submission date Aug 01, 2017
Last update date Jul 25, 2021
Contact name Quentin Gouil
Organization name Walter and Eliza Hall
Department Epigenetics and Development
Lab Ritchie lab
Street address 1G Royal Parade
City Parkville
State/province VIC
ZIP/Postal code 3052
Country Australia
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (9)
GSM2724496 Col-0 gDNA
GSM2724497 athb15 gDNA
GSM2724498 athb25 gDNA
This SubSeries is part of SuperSeries:
GSE94459 methylC-seq, RNA-seq and sRNA-seq data over Arabidopsis thaliana germination
Relations
BioProject PRJNA396747
SRA SRP114527

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE102126_RAW.tar 60.0 Kb (http)(custom) TAR (of SAM)
GSE102126_pROK2.fa.gz 1.4 Kb (ftp)(http) FA
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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