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| Status |
Public on Feb 16, 2018 |
| Title |
MicroRNA profiles of 110 primary breast cancer tumors of systemically untreated, lymph node negative and estrogen receptor positive patients |
| Platform organism |
synthetic construct |
| Sample organism |
Homo sapiens |
| Experiment type |
Non-coding RNA profiling by array
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| Summary |
MicroRNA profiles of 110 primary breast cancer tumors of systematically untreated, lymph node negative and ER positive patients. Half of the patients developed metastasis while 55 patients remained metastasis-free. The miRCURY LNA microRNA array ready-to-spot probe-set was purchased from Exiqon. The set contains capture-probes for 1212 human, 1040 mouse and 679 rat miRNAs based on the miRBase version 16. Probes were spotted in triplets on CodeLink HD (SurModics) activated glass slides and post-processed according to the CodeLink protocol.
SUBMITTER_CITATION: Ines Block, Mark Burton, Kristina P. Sørensen, Lars Andersen, Martin J. Larsen, Martin Bak, Søren Cold, Mads Thomassen, Qihua Tan, Torben A. Kruse. Association of miR-548c-5p, miR-7-5p, miR-210-3p, miR-128-3p with recurrence in systemically untreated breast cancer. Oncotarget 2018 Jan; 9:9030-9042. https://doi.org/10.18632/oncotarget.24088
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| Overall design |
Equal amounts of RNA from all included samples were pooled and used as common reference. The analysis was carried out as two-color microarray analysis. Individual samples were labelled with Hy3 and the common reference sample was labelled with Hy5. Hybridization, washing, and scanning (Agilent G2565CA Microarray scanner) were performed according to the recommendations provided by Exiqon.
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| Contributor(s) |
Block I, Burton M, Sørensen KP, Andersen L, Larsen MJ, Bak M, Cold S, Thomassen M, Tan Q, Kruse TA |
| Citation(s) |
29507672, 38676390 |
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| Submission date |
Aug 28, 2017 |
| Last update date |
May 23, 2024 |
| Contact name |
Ines Block |
| Organization name |
Odense University Hospital
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| Department |
Department of Clinical Genetics
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| Street address |
J.B. Winsløws Vej 4
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| City |
Odense |
| ZIP/Postal code |
5000 |
| Country |
Denmark |
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| Platforms (1) |
| GPL23960 |
Custom miRCURY LNA microRNA array (Exiqon #208410; mirBase version 16) |
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| Samples (110)
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| Relations |
| BioProject |
PRJNA400378 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE103161_RAW.tar |
76.6 Mb |
(http)(custom) |
TAR (of GPR) |
| Processed data included within Sample table |
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