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Series GSE103629 Query DataSets for GSE103629
Status Public on Aug 31, 2018
Title Transcriptome wide analysis of Cnot3 target mRNA in mouse hearts
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Through RNA immunoprecipitation with anti-Cnot3 antiboy from mouse heart lysates and RNA-seq (Cnot3 RIP-seq) and gene ontology analyses, we show the comprehensive picute of cardiac Cnot3 target genes.
 
Overall design mRNA expression profiles in anti-Cnot3 IgG RIP, control IgG RIP and Input (heart lysates of 4 week old mice) (N=2 experiments) were generated by RNA sequencing. RNA was extracted using TRIZOL reagent (Invitrogen). RNA sequencing was conducted in the laboratory of Yutaka Suzuki, The University of Tokyo (Tokyo, Japan).
 
Contributor(s) Kuba K, Nakaoka S, Suzuki Y, Yamaguchi T
Citation(s) 29438013
Submission date Sep 08, 2017
Last update date May 15, 2019
Contact name Keiji Kuba
E-mail(s) kuba@med.akita-u.ac.jp
Organization name Akita University
Department Biochemistry and metabolic science
Street address 1-1-1 Hondo
City Akita
ZIP/Postal code 010-8543
Country Japan
 
Platforms (1)
GPL21493 Illumina HiSeq 3000 (Mus musculus)
Samples (6)
GSM2776935 IgG_01
GSM2776936 IgG_02
GSM2776937 Cnot3_01
Relations
BioProject PRJNA403814
SRA SRP117149

Download family Format
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE103629_rcmat.txt.gz 494.6 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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