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GEO accession:
Series GSE104334
Query DataSets for GSE104334
Status
Public on Oct 05, 2017
Title
Cohesin loss eliminates all loop domains
Organism
Homo sapiens
Experiment type
Other
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
28985562
,
33262376
Submission date
Sep 27, 2017
Last update date
Jul 25, 2021
Contact name
Suhas Rao
E-mail(s)
suhasrao@post.harvard.edu
Organization name
Baylor College of Medicine
Department
Molecular and Human Genetics
Lab
The Center for Genome Architecture
Street address
1 Baylor Plaza
City
Houston
State/province
TX
ZIP/Postal code
77030
Country
USA
Platforms (3)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL20795
HiSeq X Ten (Homo sapiens)
Samples (132)
Less...
More...
GSM2795535
Rao-2017-HIC001
GSM2795536
Rao-2017-HIC002
GSM2795537
Rao-2017-HIC003
GSM2795538
Rao-2017-HIC004
GSM2795539
Rao-2017-HIC005
GSM2795540
Rao-2017-HIC006
GSM2809538
Rao-2017-HIC007
GSM2809539
Rao-2017-HIC008
GSM2809540
Rao-2017-HIC009
GSM2809541
Rao-2017-HIC010
GSM2809542
Rao-2017-HIC011
GSM2809543
Rao-2017-HIC012
GSM2809544
Rao-2017-HIC013
GSM2809545
Rao-2017-HIC014
GSM2809546
Rao-2017-HIC015
GSM2809547
Rao-2017-HIC016
GSM2809548
Rao-2017-HIC017
GSM2809549
Rao-2017-HIC018
GSM2809550
Rao-2017-HIC019
GSM2809551
Rao-2017-HIC020
GSM2809552
Rao-2017-HIC021
GSM2809553
Rao-2017-HIC022
GSM2809554
Rao-2017-HIC023
GSM2809555
Rao-2017-HIC024
GSM2809556
Rao-2017-HIC025
GSM2809557
Rao-2017-HIC026
GSM2809558
Rao-2017-HIC027
GSM2809559
Rao-2017-HIC028
GSM2809560
Rao-2017-HIC029
GSM2809561
Rao-2017-HIC030
GSM2809562
Rao-2017-HIC031
GSM2809563
Rao-2017-HIC032
GSM2809564
Rao-2017-HIC033
GSM2809565
Rao-2017-HIC034
GSM2809566
Rao-2017-HIC035
GSM2809567
Rao-2017-HIC036
GSM2809568
Rao-2017-HIC037
GSM2809569
Rao-2017-HIC038
GSM2809570
Rao-2017-HIC039
GSM2809571
Rao-2017-HIC040
GSM2809572
Rao-2017-HIC041
GSM2809573
Rao-2017-HIC042
GSM2809574
Rao-2017-HIC043
GSM2809575
Rao-2017-HIC044
GSM2809576
Rao-2017-HIC045
GSM2809577
Rao-2017-HIC046
GSM2809578
Rao-2017-HIC047
GSM2809579
Rao-2017-HIC048
GSM2809580
Rao-2017-HIC049
GSM2809581
Rao-2017-HIC050
GSM2809582
Rao-2017-HIC051
GSM2809583
Rao-2017-HIC052
GSM2809584
Rao-2017-HIC053
GSM2809585
Rao-2017-HIC054
GSM2809586
Rao-2017-HIC055
GSM2809587
Rao-2017-HIC056
GSM2809588
Rao-2017-HIC057
GSM2809589
Rao-2017-HIC058
GSM2809590
Rao-2017-HIC059
GSM2809591
Rao-2017-HIC060
GSM2809592
Rao-2017-HIC061
GSM2809593
Rao-2017-HIC062
GSM2809594
Rao-2017-HIC063
GSM2809595
Rao-2017-HIC064
GSM2809596
Rao-2017-HIC065
GSM2809597
Rao-2017-HIC066
GSM2809598
Rao-2017-HIC067
GSM2809599
Rao-2017-HIC068
GSM2809600
Rao-2017-HIC069
GSM2809601
Rao-2017-HIC032S
GSM2809602
Rao-2017-HIC033S
GSM2809603
Rao-2017-HIC036S
GSM2809604
Rao-2017-HIC037S
GSM2809605
Rao-2017-HIC040S
GSM2809606
Rao-2017-HIC041S
GSM2809607
Rao-2017-HIC044S
GSM2809608
Rao-2017-HIC045S
GSM2809609
Rao-2017-CHIP001-RAD21-untreated
GSM2809610
Rao-2017-CHIP002-RAD21-treated
GSM2809611
Rao-2017-CHIP003-SMC1-untreated
GSM2809612
Rao-2017-CHIP004-SMC1-treated
GSM2809613
Rao-2017-CHIP005-CTCF-untreated
GSM2809614
Rao-2017-CHIP006-CTCF-treated
GSM2809615
Rao-2017-CHIP007-CTCF-untreated
GSM2809616
Rao-2017-CHIP008-CTCF-treated
GSM2809617
Rao-2017-CHIP009-H3K27Ac-untreated
GSM2809618
Rao-2017-CHIP010-H3K27Ac-treated
GSM2809619
Rao-2017-CHIP011-H3K4me3-untreated
GSM2809620
Rao-2017-CHIP012-H3K4me3-treated
GSM2809621
Rao-2017-CHIP013-H3K4me1-untreated
GSM2809622
Rao-2017-CHIP014-H3K4me1-treated
GSM2809623
Rao-2017-CHIP015-H3K36me3-untreated
GSM2809624
Rao-2017-CHIP016-H3K36me3-treated
GSM2809625
Rao-2017-CHIP017-H3K27me3-untreated
GSM2809626
Rao-2017-CHIP018-H3K27me3-treated
GSM2809627
Rao-2017-CHIP019-H3K9me3-untreated
GSM2809628
Rao-2017-CHIP020-H3K9me3-treated
GSM2809629
Rao-2017-CHIP021-H4K16Ac-untreated
GSM2809630
Rao-2017-CHIP022-H4K16Ac-treated
GSM2809631
Rao-2017-CHIP023-H3K79me2-untreated
GSM2809632
Rao-2017-CHIP024-H3K79me2-treated
GSM2809633
Rao-2017-CHIP025-H4K20me3-untreated
GSM2809634
Rao-2017-CHIP026-H4K20me3-treated
GSM2809635
Rao-2017-CHIP027-H2AZ-untreated
GSM2809636
Rao-2017-CHIP028-H2AZ-treated
GSM2809637
Rao-2017-CHIP029-NIPBL-untreated
GSM2809638
Rao-2017-CHIP030-NIPBL-treated
GSM2856824
Rao-2017-CMV-OsTIR1-1-NT-NS
GSM2856825
Rao-2017-CMV-OsTIR1-1-T-NS
GSM2856826
Rao-2017-CMV-OsTIR1-2-NT-S
GSM2856827
Rao-2017-CMV-OsTIR1-2-T-S
GSM2856828
Rao-2017-CMV-OsTIR1-3-NT-S
GSM2856829
Rao-2017-CMV-OsTIR1-3-T-S
GSM2856830
Rao-2017-CMV-OsTIR1-4-NT-S
GSM2856831
Rao-2017-CMV-OsTIR1-4-T-S
GSM2856832
Rao-2017-RAD21-mAC-1-NT-NS
GSM2856833
Rao-2017-RAD21-mAC-1-T-NS
GSM2856834
Rao-2017-RAD21-mAC-2-NT-S
GSM2856835
Rao-2017-RAD21-mAC-2-T-S
GSM2856836
Rao-2017-RAD21-mAC-3-NT-S
GSM2856837
Rao-2017-RAD21-mAC-3-T-S
GSM2856838
Rao-2017-RAD21-mAC-4-NT-S
GSM2856839
Rao-2017-RAD21-mAC-4-T-S
GSM3242972
Rao-2017-CHIP031-input-untreated
GSM3242973
Rao-2017-CHIP032-input-treated
GSM3242974
Rao-2017-CHIP033-input-untreated
GSM3242975
Rao-2017-CHIP034-input-treated
GSM3242976
Rao-2017-CHIP035-input-untreated
GSM3242977
Rao-2017-CHIP036-input-treated
GSM3242978
Rao-2017-CHIP037-input-untreated
GSM3242979
Rao-2017-CHIP038-input-treated
GSM3242980
Rao-2017-CHIP039-input-treated
This SuperSeries is composed of the following SubSeries:
GSE104333
Cohesin loss eliminates all loop domains [HiC]
GSE104888
Cohesin loss eliminates all loop domains [ChIP-Seq]
GSE106886
Cohesin loss eliminates all loop domains [PRO-Seq]
Relations
BioProject
PRJNA412386
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE104334_RAW.tar
455.7 Gb
(http)
(custom)
TAR (of BW, HIC, TDF)
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