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Series GSE104967 Query DataSets for GSE104967
Status Public on Feb 07, 2018
Title mRNA Profiling of Murine 4T1 Breast Cancer Cells with Asns knocked down
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Murine 4T1-T Breast cancer cells were infected with retroviral vectors harboring shRNAs for murine or a Renilla, as negative control. After selection cells were harvested and processed with the NuGen Ovation RNAseq system V2. Libraries were sequenced on an Illumina platform and mapped using Bowtie2 to the mm10 genome prior to transcript quantification using HT-Count.
 
Overall design 4T1 Breast Cancer Cells with Asns knocked down
 
Contributor(s) Knott SV
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Oct 13, 2017
Last update date May 15, 2019
Contact name Simon Robert Vincent Knott
Organization name Cold Spring Harbor Laboratory
Department Biology
Lab Hannon
Street address 1 Bungtown Rd
City Cold Spring Harbor
State/province NY
ZIP/Postal code 11724
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (6)
GSM2811240 shAsns-1 Replicate A
GSM2811241 shAsns-1 Replicate B
GSM2811242 shAsns-2 Replicate A
This SubSeries is part of SuperSeries:
GSE104968 mRNA profiling of 4T1-T cells with altered asparagine bioavailability
Relations
BioProject PRJNA414245
SRA SRP119932

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE104967_4T1_T_Knockdown_All_Counts.txt.gz 215.0 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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