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Series GSE105918 Query DataSets for GSE105918
Status Public on May 31, 2018
Title In situ Hi-C profiles of mouse CD4+ T cells, CD8+ T cells and B cells
Organism Mus musculus
Experiment type Other
Summary Over recent decades, it has been proposed that DNA interactions between mammalian chromosomes play an important role in the regulation of gene expression and cell fate determination. To study how DNA interactions change between cell types, high throughput chromosome confirmation capture (Hi-C) profiles were collected from CD4+ T cells, CD8+ T cells and B cells from mice.
Overall design In situ HiC was performed separately on three cell types (CD4+ T cells, CD8+ T cells and B cells) extracted from two mice. This lead to six samples in total with the two mice providing biological replicates for each cell type.
Contributor(s) Johanson TM, Coughlan HD, Smyth GK, Allan R
Citation(s) 29883495
Submission date Oct 23, 2017
Last update date May 15, 2019
Contact name Gordon K Smyth
Phone (+61 3) 9345 2326
Fax (+61 3) 9347 0852
Organization name Walter and Eliza Hall Institute of Medical Research
Department Bioinformatics
Lab Smyth
Street address 1G Royal Pde
City Parkville
State/province Vic
ZIP/Postal code 3052
Country Australia
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (6)
GSM2828700 CD4+ T cells 1
GSM2828701 CD4+ T cells 2
GSM2828702 B cells 1
BioProject PRJNA415483
SRA SRP121021

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Supplementary file Size Download File type/resource
GSE105918_GenomicRegions.bed.gz 372.2 Kb (ftp)(http) BED
GSE105918_RAW.tar 1.1 Gb (http)(custom) TAR (of MTX)
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Raw data are available in SRA
Processed data provided as supplementary file

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