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Series GSE10600 Query DataSets for GSE10600
Status Public on Feb 01, 2009
Title aCGH study of invasive duct carcinoma (IDC) of the breast without axillary lymph node LN and with sentinel LN metastasis
Organism Homo sapiens
Experiment type Genome variation profiling by array
Summary 22 patients with IDC: 8 without LN metastases (IDC) and 14 with sentinel LN metastases (IDCM). Sampling was limited to 29 paraffin blocks which could be used up without interference with diagnostic procedures: 8 IDCs, 11 IDCMs and 10 ipsilateral LN metastases [5 to the sentinel LN (first in lymph drainage chain, MS) and 5 to more distal (MD)]. 7 IDCMs had samples of their LN metastases (IDCM9,13, 14, 15, 17, 18, 19). 3 samples of metastases (MS20, 21, 22) did not have paired primary IDCM samples and 4 IDCMs (IDCM10, 11, 12, 16) did not have samples of their LN metastases.
Keywords: Comparative clinical study
Overall design Histological sections microdissected, DNA extracted, subjected to whole genome amplification protocol (SCOMP) and aCGH.
Contributor(s) Done S, Iakovlev V
Citation(s) 19760610
Submission date Feb 21, 2008
Last update date Mar 19, 2012
Contact name Susan Done
Organization name Ontario Cancer Institute
Street address 610 University Ave
City Toronto
ZIP/Postal code M5G2M9
Country Canada
Platforms (1)
GPL6514 UHN Homo Sapiens cDNA microarray 10K
Samples (29)
GSM267194 IDC1
GSM267195 IDC2
GSM267196 IDC3
BioProject PRJNA107763

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE10600_RAW.tar 44.6 Mb (http)(custom) TAR (of GPR)
GSE10600_raw_data.txt 12.9 Mb (ftp)(http) TXT
Processed data included within Sample table

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