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Series GSE106136 Query DataSets for GSE106136
Status Public on Apr 25, 2018
Title Transcriptome analyses of three Zymoseptoria tritici isolates during infection of Triticum aestivum
Organisms Triticum aestivum; Zymoseptoria tritici
Experiment type Expression profiling by high throughput sequencing
Summary We collected infected wheat leaf material at up to nine time points per Z. tritici isolate and conducted confocal microscopy analyses to select samples for RNA extraction and transcriptome sequencing based on the morphological infection stage. Thereby, we generated stage-specific RNA-seq datasets corresponding to the four core infection stages allowing us to compare the isolate-specific expression profiles at the same developmental stage of infection. Our final dataset comprises four stage-specific transcriptomes per isolate with two biological replicates per sample. Comparative transcriptome analyses reveal that the expression phenotypes of the three isolates differ significantly.
Overall design Comparative analyses of stage-specific and isolate-specific expression profiles of three Z. tritici isolates
Contributor(s) Haueisen J, Stukenbrock EH
Citation(s) 30680113, 32842972, 33724368, 35108092
Submission date Oct 25, 2017
Last update date Mar 31, 2022
Contact name Janine Haueisen
Organization name Christian-Albrechts University of Kiel
Department Botanical Institute
Lab Environmental Genomics
Street address Am Botanischen Garten 1-9
City Kiel
ZIP/Postal code 24118
Country Germany
Platforms (1)
GPL24181 Illumina HiSeq 2500 (Triticum aestivum; Zymoseptoria tritici)
Samples (24)
GSM2830270 Zt05_Ta_A_01
GSM2830271 Zt05_Ta_A_02
GSM2830272 Zt05_Ta_B_01
BioProject PRJNA415716
SRA SRP121407

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Supplementary file Size Download File type/resource
GSE106136_raw_read_counts_all_genes_all_isolates.txt.gz 444.2 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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