GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Series GSE106431
Query DataSets for GSE106431
Status
Public on Aug 15, 2018
Title
Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits
Organisms
Branchiostoma lanceolatum
;
Danio rerio
;
Oryzias latipes
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
30464347
Submission date
Nov 02, 2017
Last update date
May 15, 2019
Contact name
Juan J. Tena
E-mail(s)
jjtenagu@upo.es
Organization name
CABD/CSIC
Street address
Univ. Pablo Olavide, Ctra. Utrera km1
City
Sevilla
ZIP/Postal code
41013
Country
Spain
Platforms (7)
Less...
More...
GPL14875
Illumina HiSeq 2000 (Danio rerio)
GPL18413
Illumina HiSeq 2500 (Danio rerio)
GPL20177
Illumina HiSeq 2000 (Branchiostoma lanceolatum)
GPL21741
Illumina HiSeq 4000 (Danio rerio)
GPL24206
Illumina HiSeq 2500 (Branchiostoma lanceolatum)
GPL24210
Illumina HiSeq 4000 (Branchiostoma lanceolatum)
GPL24211
Illumina HiSeq 4000 (Oryzias latipes)
Samples (217)
Less...
More...
GSM2836695
ChIPseq amphioxus H3K27ac 15h replicate 1
GSM2836696
ChIPseq amphioxus H3K27ac 15h replicate 2
GSM2836697
ChIPseq amphioxus H3K27ac 36h replicate 1
GSM2836698
ChIPseq amphioxus H3K27ac 36h replicate 2
GSM2836699
ChIPseq amphioxus H3K27ac 8h replicate 1
GSM2836700
ChIPseq amphioxus H3K27ac 8h replicate 2
GSM2836701
ChIPseq amphioxus H3K27me3 15h replicate 1
GSM2836702
ChIPseq amphioxus H3K27me3 15h replicate 2
GSM2836703
ChIPseq amphioxus H3K27me3 36h replicate 1
GSM2836704
ChIPseq amphioxus H3K27me3 36h replicate 2
GSM2836705
ChIPseq amphioxus H3K27me3 8h replicate 1
GSM2836706
ChIPseq amphioxus H3K4me3 15h replicate 1
GSM2836707
ChIPseq amphioxus H3K4me3 15h replicate 2
GSM2836708
ChIPseq amphioxus H3K4me3 36h replicate 1
GSM2836709
ChIPseq amphioxus H3K4me3 36h replicate 2
GSM2836710
ChIPseq amphioxus H3K4me3 8h replicate 1
GSM2836711
ChIPseq amphioxus H3K4me3 8h replicate 2
GSM2837480
ATACseq amphioxus 15h replicate 1
GSM2837481
ATACseq amphioxus 15h replicate 2
GSM2837482
ATACseq amphioxus 36h replicate 1
GSM2837483
ATACseq amphioxus 60h replicate 1
GSM2837484
ATACseq amphioxus 60h replicate 2
GSM2837485
ATACseq amphioxus 8h replicate 1
GSM2837486
ATACseq amphioxus 8h replicate 2
GSM2837487
ATACseq amphioxus hepatic replicate 1
GSM2837488
ATACseq amphioxus hepatic replicate 2
GSM2837489
ATACseq zebra 48 hpf replicate 1
GSM2837490
ATACseq zebra 48 hpf replicate 2
GSM2837491
ATACseq zebra 80% epiboly replicate 1
GSM2837492
ATACseq zebra 80% epiboly replicate 2
GSM2837493
ATACseq zebra 8 somites replicate 1
GSM2837494
ATACseq zebra 8 somites replicate 2
GSM2837495
ATACseq zebra dome replicate 1
GSM2837496
ATACseq zebra dome replicate 2
GSM2837497
ATACseq zebra shield replicate 1
GSM2837498
ATACseq zebra shield replicate 2
GSM2837499
ATACseq medaka st11 replicate 1
GSM2837500
ATACseq medaka st11 replicate 2
GSM2837501
ATACseq medaka st13 replicate 1
GSM2837502
ATACseq medaka st13 replicate 2
GSM2837503
ATACseq medaka st19 replicate 1
GSM2837504
ATACseq medaka st19 replicate 2
GSM2837505
ATACseq medaka st25 replicate 1
GSM2837506
ATACseq medaka st25 replicate 2
GSM2837507
ATACseq medaka st32 replicate 1
GSM2837508
ATACseq medaka st32 replicate 2
GSM2837509
Amphioxus Embryo 32 Cell CAGE
GSM2837510
Amphioxus Embryo 8h CAGE
GSM2837511
Amphioxus Embryo 15h CAGE
GSM2837512
Amphioxus Neural Tube CAGE
GSM2837513
Amphioxus Hepatic System CAGE
GSM2837514
Amphioxus Female Gonads CAGE
GSM2837515
Amphioxus Muscle CAGE
GSM2837516
RNAseq amphioxus 10h replicate 1
GSM2837517
RNAseq amphioxus 10h replicate 2
GSM2837518
RNAseq amphioxus 11h replicate 1
GSM2837519
RNAseq amphioxus 11h replicate 2
GSM2837520
RNAseq amphioxus 15h replicate 1
GSM2837521
RNAseq amphioxus 15h replicate 2
GSM2837522
RNAseq amphioxus 15h replicate 3
GSM2837523
RNAseq amphioxus 15h replicate 4
GSM2837524
RNAseq amphioxus 18h replicate 1
GSM2837525
RNAseq amphioxus 18h replicate 2
GSM2837526
RNAseq amphioxus 21h replicate 1
GSM2837527
RNAseq amphioxus 21h replicate 2
GSM2837528
RNAseq amphioxus 24h replicate 1
GSM2837529
RNAseq amphioxus 24h replicate 2
GSM2837530
RNAseq amphioxus 27h replicate 1
GSM2837531
RNAseq amphioxus 27h replicate 2
GSM2837532
RNAseq amphioxus 32cells replicate 1
GSM2837533
RNAseq amphioxus 32cells replicate 2
GSM2837534
RNAseq amphioxus 32cells replicate 3
GSM2837535
RNAseq amphioxus 32cells replicate 4
GSM2837536
RNAseq amphioxus 32cells replicate 5
GSM2837537
RNAseq amphioxus 36h replicate 1
GSM2837538
RNAseq amphioxus 36h replicate 2
GSM2837539
RNAseq amphioxus 36h replicate 3
GSM2837540
RNAseq amphioxus 50h replicate 1
GSM2837541
RNAseq amphioxus 50h replicate 2
GSM2837542
RNAseq amphioxus 60h replicate 1
GSM2837543
RNAseq amphioxus 60h replicate 2
GSM2837544
RNAseq amphioxus 7h replicate 1
GSM2837545
RNAseq amphioxus 7h replicate 2
GSM2837546
RNAseq amphioxus 8h replicate 1
GSM2837547
RNAseq amphioxus 8h replicate 2
GSM2837548
RNAseq amphioxus Blastula replicate 1
GSM2837549
RNAseq amphioxus Blastula replicate 2
GSM2837550
RNAseq amphioxus Cirri
GSM2837551
RNAseq amphioxus Eggs replicate 1
GSM2837552
RNAseq amphioxus Eggs replicate 2
GSM2837553
RNAseq amphioxus Epidermis
GSM2837554
RNAseq amphioxus Female Gonads
GSM2837555
RNAseq amphioxus Gills replicate 1
GSM2837556
RNAseq amphioxus Gills replicate 2
GSM2837557
RNAseq amphioxus Gut replicate 1
GSM2837558
RNAseq amphioxus Gut replicate 2
GSM2837559
RNAseq amphioxus Hepatic replicate 1
GSM2837560
RNAseq amphioxus Hepatic replicate 2
GSM2837561
RNAseq amphioxus Male Gonads replicate 1
GSM2837562
RNAseq amphioxus Male Gonads replicate 2
GSM2837563
RNAseq amphioxus Muscle replicate 1
GSM2837564
RNAseq amphioxus Muscle replicate 2
GSM2837565
RNAseq amphioxus Neural Tube replicate 1
GSM2837566
RNAseq amphioxus Neural Tube replicate 2
GSM2837567
RNAseq amphioxus Pre-metamorphic stage
GSM2837568
RNAseq zebrafish 12 hpf
GSM2837569
RNAseq zebrafish 16 hpf
GSM2837570
RNAseq zebrafish 20 hpf
GSM2837571
RNAseq zebrafish 26 hpf
GSM2837572
RNAseq zebrafish 2 hpf
GSM2837573
RNAseq zebrafish 30 hpf
GSM2837574
RNAseq zebrafish 36 hpf
GSM2837575
RNAseq zebrafish 48 hpf
GSM2837576
RNAseq zebrafish 6 hpf
GSM2837577
RNAseq zebrafish 72 hpf
GSM2837578
RNAseq zebrafish 8 hpf
GSM2837579
RNAseq medaka st11 replicate 1
GSM2837580
RNAseq medaka st11 replicate 2
GSM2837581
RNAseq medaka st11 replicate 3
GSM2837582
RNAseq medaka st13 replicate 1
GSM2837583
RNAseq medaka st13 replicate 2
GSM2837584
RNAseq medaka st13 replicate 3
GSM2837585
RNAseq medaka st16 replicate 1
GSM2837586
RNAseq medaka st16 replicate 2
GSM2837587
RNAseq medaka st16 replicate 3
GSM2837588
RNAseq medaka st19 replicate 1
GSM2837589
RNAseq medaka st19 replicate 2
GSM2837590
RNAseq medaka st19 replicate 3
GSM2837591
RNAseq medaka st25 replicate 1
GSM2837592
RNAseq medaka st25 replicate 2
GSM2837593
RNAseq medaka st25 replicate 3
GSM2837594
RNAseq medaka st32 replicate 1
GSM2837595
RNAseq medaka st32 replicate 2
GSM2837596
RNAseq medaka st32 replicate 3
GSM3195782
dlx1a_24hpf_rep1
GSM3195783
dlx1a_24hpf_rep2
GSM3195784
dlx2a_24hpf_rep1
GSM3195785
dlx2a_24hpf_rep2
GSM3195786
dlx2b_24hpf_rep1
GSM3195787
dlx3b_24hpf_rep1
GSM3195788
dlx4a_24hpf_rep1
GSM3195789
dlx4b_24hpf_rep1
GSM3195790
dlx5a_24hpf_rep1
GSM3195791
dlx6a_24hpf_rep1
GSM3195792
eng2a_24hpf_rep1
GSM3195793
eng2a_24hpf_rep2
GSM3195794
eng2b_24hpf_rep1
GSM3195795
fezf1_24hpf_rep1
GSM3195796
foxa1_24hpf_rep1
GSM3195797
foxa1_24hpf_rep2
GSM3195798
foxa2_24hpf_rep1
GSM3195799
gbx2_24hpf_rep1
GSM3195800
meox1_24hpf_rep1
GSM3195801
meox1_24hpf_rep2
GSM3195802
meox2b_24hpf_rep1
GSM3195803
meox2b_24hpf_rep2
GSM3195804
pax2a_24hpf_rep1
GSM3195805
pax2a_24hpf_rep2
GSM3195806
pax2b_24hpf_rep1
GSM3195807
pax2b_24hpf_rep2
GSM3195808
pax3a_24hpf_rep1
GSM3195809
pax5_24hpf_rep1
GSM3195810
pax6a_24hpf_rep1
GSM3195811
pax6b_24hpf_rep1
GSM3195812
pax7a_24hpf_rep1
GSM3195813
pax7b_24hpf_rep1
GSM3195814
rx3_24hpf_rep1
GSM3195815
shha_24hpf_rep1
GSM3195816
shha_24hpf_rep2
GSM3195817
shhb_24hpf_rep1
GSM3195818
shhb_24hpf_rep2
GSM3195819
Dlx_15hpf_rep1
GSM3195820
En_15hpf_rep1
GSM3195821
En_8hpf_rep1
GSM3195822
Fezf_15hpf_rep1
GSM3195823
Fezf_8hpf_rep1
GSM3195824
FoxAa_15hpf_rep1
GSM3195825
Gbx_15hpf_rep1
GSM3195826
Gbx_8hpf_rep1
GSM3195827
Hh_15hpf_rep1
GSM3195828
Hh_8hpf_rep1
GSM3195829
Meox_15hpf_rep1
GSM3195830
Meox_15hpf_rep2
GSM3195831
Pax2.5.8_15hpf_rep1
GSM3195832
Pax2.5.8_8hpf_rep1
GSM3195833
Pax3.7_15hpf_rep1
GSM3195834
Pax4.6_15hpf_rep1
GSM3195835
Rax_15hpf_rep1
GSM3195836
Rax_8hpf_rep1
GSM3195837
Dhh_E95_rep1
GSM3195838
Dlx1_E95_rep1
GSM3195839
Dlx1_E95_rep2
GSM3195840
Dlx2_E95_rep1
GSM3195841
Dlx2_E95_rep2
GSM3195842
Dlx3_E95_rep1
GSM3195843
Dlx4_E95_rep1
GSM3195844
Dlx5_E95_rep1
GSM3195845
Dlx6_E95_rep1
GSM3195846
En1_E95_rep1
GSM3195847
En2_E95_rep1
GSM3195848
En2_E95_rep2
GSM3195849
FoxA1_E95_rep1
GSM3195850
FoxA2_E95_rep1
GSM3195851
FoxA2_E95_rep2
GSM3195852
Gbx2_E95_rep1
GSM3195853
Gbx2_E95_rep2
GSM3195854
Ihh_E95_rep1
GSM3195855
Meox1_E95_rep1
GSM3195856
Pax3_E95_rep1
GSM3195857
Pax5_E95_rep1
GSM3195858
Pax5_E95_rep2
GSM3195859
Pax6_E95_rep1
GSM3195860
Pax7_E95_rep1
GSM3195861
Pax7_E95_rep2
GSM3195862
Rax_E95_rep1
GSM3195863
Rax_E95_rep2
GSM3195864
Shh_E95_rep1
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE106372
Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [ChIP-Seq]
GSE106428
Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [ATAC-Seq]
GSE106429
Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [CAGE]
GSE106430
Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [RNA-Seq]
GSE115945
Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [4C-seq]
Relations
BioProject
PRJNA416859
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE106431_RAW.tar
42.0 Mb
(http)
(custom)
TAR (of BED, BEDGRAPH, TXT)
SRA Run Selector
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
Less...
More...