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Series GSE107366 Query DataSets for GSE107366
Status Public on Feb 13, 2019
Title Transcriptional profiling of milk epithelial cells of Kashmiri and Jersey cattle
Organisms Bos taurus; Bos indicus
Experiment type Expression profiling by high throughput sequencing
Summary The purpose of the present study was to provide a comprehensive transcriptome profiling of mammary gland and to find the key differences in the milk production and related traits between Jersey and Kashmiri cattle. Casein and whey protein genes were found to be highly expressed throughout the lactation cycle. Largest differences in DEGs was reported between D15 and D90 with 1805 genes in Kashmiri cattle and between D15 and D250 with 3392 genes in Jersey cattle.
 
Overall design The milk samples were collected for epithelial cell isolation from three Kashmiri and three Jersey cattle, representing two study groups. The samples were collected at three time points, day 15 (D15), D90 and D250 of the lactation cycle. There were total three biological replicates per group.
 
Contributor(s) Bhat B, Bhat SA, Mudasir Ahmad S
Citation(s) 30721247
Submission date Nov 27, 2017
Last update date May 15, 2019
Contact name Basharat Ahmad Bhat
E-mail(s) bb284@snu.edu.in
Phone 9469662374
Organization name Sher-e-Kashmir University of Agricultural Sciences and Technology
Department Animal Biotechnology
Street address Shuhama
City Gandarbal
State/province Kashmir
ZIP/Postal code 190006
Country India
 
Platforms (2)
GPL19172 Illumina HiSeq 2500 (Bos taurus)
GPL19746 Illumina HiSeq 2500 (Bos indicus)
Samples (17)
GSM2865485 Stage 1 sample 1 from Jersey cattle
GSM2865486 Stage 1 sample 2 from Jersey cattle
GSM2865487 Stage 1 sample 3 from Jersey cattle
Relations
BioProject PRJNA419906
SRA SRP125676

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE107366_milk_transcriptomics_gene_exp.txt.gz 1.2 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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