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Series GSE107691 Query DataSets for GSE107691
Status Public on Dec 27, 2018
Title Expression data from Wild-type (WT) and Astrocyte elevated gene-1 (AEG-1) knockout (KO) bone marrow derived macrophages (BMDM)
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary AEG-1 is overexpressed in human hepatocellular carcinoma (HCC) and positively regulates inflammation and development and progression of HCC. An AEG-1KO mouse was generated to understand the function of AEG-1 in inflammatory processes in HCC.
Overall design BMDMs were isolated from WT and AEG-1KO mice for RNA extraction and RNA-sequencing.
Contributor(s) Sarkar D, Dozmorov M
Citation(s) 30181179
Submission date Dec 05, 2017
Last update date May 15, 2019
Contact name Mikhail Dozmorov
Organization name Virginia Commonwealth University
Department Biostatistics
Street address 830 E Main St
City Richmond
State/province VA
ZIP/Postal code 23298
Country USA
Platforms (1)
GPL21493 Illumina HiSeq 3000 (Mus musculus)
Samples (6)
GSM2876097 KO_UN_1_S7
GSM2876098 KO_UN_2_S8
GSM2876099 KO_UN_3_S9
BioProject PRJNA421088
SRA SRP126140

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE107691_WT_UN_KO_UN_counts.txt.gz 422.0 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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