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Series GSE109244 Query DataSets for GSE109244
Status Public on Jan 16, 2019
Title Next Generation Sequencing of Transcriptomes of Cutaneous Melanocytes and Metastatic Melanoma Cell Lines (miRNA-Seq)
Organism Homo sapiens
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary The goal of the study is to compare NGS-derived transcriptome (miRNA-seq) profiles of melanocytes and metastatic melanoma cells and identify microRNAs involved in melanomagenesis
 
Overall design miRNA profiles are generated for low passage primary melanocytes and melanoma cells using Illumina’s HiSeq 2500 platform
 
Contributor(s) Setaluri V, Perera R
Citation(s) 31338875
Submission date Jan 16, 2018
Last update date Jan 13, 2023
Contact name Vijayasaradhi Setaluri
E-mail(s) setaluri@wisc.edu
Phone 608-263-5362
Organization name University of Wisconsin-Madison
Department Dermatology
Street address 1300 University Avenue
City MADISON
ZIP/Postal code 53706
Country USA
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (7)
GSM2935811 MRA2 miRNA-seq
GSM2935812 MRA4 miRNA-seq
GSM2935813 MRA5 miRNA-seq
This SubSeries is part of SuperSeries:
GSE109246 Next Generation Sequencing of Transcriptomes of Cutaneous Melanocytes and Metastatic Melanoma Cell Lines
Relations
BioProject PRJNA430243
SRA SRP131010

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE109244_miRNA_customalign_mirbasealign.xlsx 783.3 Kb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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