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Series GSE111286 Query DataSets for GSE111286
Status Public on Feb 28, 2021
Title Singlet oxygen induced RNA oxidation and translational arrest [CHX]
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary Effect of various concentrations of CHX on gene expression in Arabidopsis
 
Overall design Total RNA obtained from 2-week old Arabidopsis seedlings subjected to 0, 1, 10, 100 µM of CHX for 2 hours in light (30 µE)
 
Contributor(s) Koh E, Leshkowitz D, Fluhr R
Citation(s) 36420020
Submission date Feb 28, 2018
Last update date Dec 09, 2022
Contact name Dena Leshkowitz
E-mail(s) dena.leshkowitz@weizmann.ac.il
Organization name Weizmann Institute of Science
Department Bioinformatics Unit, Life Sciences Core Facilities
Street address P.O.B. 26
City Rehovot
ZIP/Postal code 76100
Country Israel
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (12)
GSM3027867 CHX 0 µM, rep1
GSM3027868 CHX 0 µM, rep2
GSM3027869 CHX 0 µM, rep3
This SubSeries is part of SuperSeries:
GSE111288 Singlet oxygen induced RNA oxidation and translational arrest
Relations
BioProject PRJNA436415
SRA SRP133703

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE111286_Deseq_raw_norm_no_UMI_filter_SO19J.xlsx 4.9 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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