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Series GSE111577 Query DataSets for GSE111577
Status Public on Mar 12, 2018
Title The cold shock response of Bacillus subtilis analyzed by RNA-sequencing: YplP regulates pyruvate transport at low temperatures
Organism Bacillus subtilis
Experiment type Expression profiling by high throughput sequencing
Summary The cold shock response of B. subtilis was defined after 0.5 hr and 2 hr cold shock using RNA sequencing. We identified novel RNAs (including non-coding RNAs) that play a role during growth at low temperatures. Deletion of the cold induced protein YplP results in a cold sensitive phenotype, and a comparative RNA sequencing analysis suggests that YplP induces pftAB expression after prolonged incubation at low temperatures, thereby optimizing pyruvate transport under cold shock conditions.
Overall design 2 conditions, 2 strains, 2 timepoints
Contributor(s) van den Esker MH, Kuipers OP, de Jong A
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Submission date Mar 08, 2018
Last update date Mar 12, 2018
Contact name Anne de Jong
Phone +31 50 363 2047
Organization name university of Groningen
Department Molecular Genetics
Street address Nijenborgh 7
City Groningen
ZIP/Postal code 9747 AG
Country Netherlands
Platforms (1)
GPL23851 Ion Torrent Proton (Bacillus subtilis)
Samples (9)
GSM3034520 WT-L-37
GSM3034521 WT-L-CS
GSM3034522 WT-S-37
BioProject PRJNA437458
SRA SRP134186

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE111577_Processed_data_rpkm.txt.gz 137.3 Kb (ftp)(http) TXT
GSE111577_RAW.tar 1.0 Mb (http)(custom) TAR (of RPKM)
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Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

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