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| Status |
Public on Aug 22, 2018 |
| Title |
Next Generation Sequencing Facilitates Quantitative Analysis of seed development of Tartary buckwheat Transcriptomes |
| Organism |
Fagopyrum tataricum |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We generated 76.61 Gb of high-quality sequencing data (~8.51 Gb per sample) and catalogued the expression profiles of 9,765 annotated Tartary buckwheat genes in each sample. The analysis showed differences of transcriptomes during the development of buckwheat seed. We identified numerous differentially expressed genes that exhibited distinct expression patterns. These genes have known or potential roles in development of buckwheat seed. Therefore, they are appealing candidates for further investigation of the gene expression and associated regulatory mechanisms related to development.
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| Overall design |
buckwheat seeds mRNA profiles of the development were generated by deep sequencing, in triplicate, using Illumina HiSeq4000.
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| Contributor(s) |
Liu M |
| Citation(s) |
30170551 |
| |
| Submission date |
Mar 16, 2018 |
| Last update date |
Nov 21, 2018 |
| Contact name |
Moyang Liu |
| E-mail(s) |
cooljeep@sjtu.edu.cn
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| Organization name |
Shanghai Jiao Tong University
|
| Department |
School of Agriculture and Biology
|
| Street address |
dongchuan road 800
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| City |
Shanghai |
| ZIP/Postal code |
200240 |
| Country |
China |
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| Platforms (1) |
| GPL24740 |
Illumina HiSeq 4000 (Fagopyrum tataricum) |
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| Samples (9)
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| Relations |
| BioProject |
PRJNA438646 |
| SRA |
SRP135871 |
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