NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE113582 Query DataSets for GSE113582
Status Public on Oct 01, 2019
Title Extensive Transcriptional and Translational Regulation Occur During the Maturation of Malaria Parasite Sporozoites
Organisms Plasmodium falciparum 3D7; Plasmodium yoelii yoelii 17XNL
Experiment type Expression profiling by high throughput sequencing
Summary These data were used to assess gene expression and dynamics between oocyst sporozoites and salivary gland sporozoites for both Plasmodium falciparum and Plasmodium yoelii.
 
Overall design Sporozoites (Plasmodium falciparum, Plasmodium yoelii) from either the oocyst or salivary gland of Anopheles stephensi mosquitoes were purified twice by an Accudenz discontinuous density gradient and their RNA was extracted using a Qiagen Rneasy Kit with added DNaseI module. All experiments were done in biological triplicate.
 
Contributor(s) Lindner SE, Swearingen KE, Shears M, Walker MP, Vrana EN, Hart KJ, Minns AM, Sinnis P, Moritz RL, Kappe SH
Citation(s) 31673027
NIH grant(s)
Grant ID Grant title Affiliation Name
K22 AI101039 Dissection of RNA Storage Granules Essential to Plasmodium Transmission PENNSYLVANIA STATE UNIVERSITY-UNIV PARK Scott Eugene Lindner
R01 AI123341 Mechanisms Governing Translational Regulation During Plasmodium Transmission PENNSYLVANIA STATE UNIVERSITY-UNIV PARK Scott Eugene Lindner
Submission date Apr 24, 2018
Last update date Nov 14, 2019
Contact name Scott E. Lindner
E-mail(s) Scott.Lindner@psu.edu
Phone 8148674062
Organization name Penn State University
Department Biochemistry and Molecular Biology
Street address W224 Millennium Science Complex
City University Park
State/province Pennsylvania
ZIP/Postal code 16802
Country USA
 
Platforms (2)
GPL23784 Illumina HiSeq 2500 (Plasmodium yoelii yoelii 17XNL)
GPL24926 Illumina HiSeq 2500 (Plasmodium falciparum 3D7)
Samples (12)
GSM3109291 PfOO-1
GSM3109292 PfOO-2
GSM3109293 PfOO-3
Relations
BioProject PRJNA453153
SRA SRP142460

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE113582_Lindner_and_Swearingen_et_al_htseq-count_all_samples.xlsx.gz 622.7 Kb (ftp)(http) XLSX
GSE113582_Supp_Table_1_-_TR-SPZ_Composite_File_final_v2_UOS_UIS_proteins_only_top_half_.xlsx.gz 8.3 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap