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Series GSE113845 Query DataSets for GSE113845
Status Public on Aug 01, 2018
Title RNA-sequencing of WT and ΔMSN1 strains of N. crassa over a circadian time course
Organism Neurospora crassa
Experiment type Expression profiling by high throughput sequencing
Summary We performed high throughput sequencing of the transcriptome of N. crassa to quantify ultradian (<24h period) rhythms in the wild-type (FGSC#2489) and NCU02671 (msn-1) knockout (FGSC#11345) strains.
 
Overall design Sampling of liquid culture grown N. crassa every 2h over 22h in the dark from light to dark transition
 
Contributor(s) Ananthasubramaniam B, Brunner M
Citation(s) 30472532
Submission date Apr 30, 2018
Last update date Nov 26, 2018
Contact name Michael Brunner
E-mail(s) michael.brunner@bzh.uni-heidelberg.de
Phone +49 6221 54-4207
Organization name Heidelberg University
Department Biochemistry Center
Lab Circadian Rhythms and Molecular Clocks
Street address Im Neuenheimer Feld 328
City Heidelberg
State/province Baden-Württemberg
ZIP/Postal code 69120
Country Germany
 
Platforms (1)
GPL20705 Illumina HiSeq 2500 (Neurospora crassa)
Samples (24)
GSM3121130 wt 0h after lights off [WT_new_44]
GSM3121131 wt 2h after lights off [WT_new_46]
GSM3121132 wt 4h after lights off [WT_new_48]
Relations
BioProject PRJNA454262
SRA SRP144007

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE113845_WT_counts.csv.gz 860.8 Kb (ftp)(http) CSV
GSE113845_dMSN1_counts.csv.gz 861.8 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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