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GEO accession:
Series GSE114600
Query DataSets for GSE114600
Status
Public on Oct 03, 2018
Title
TRPS1 is a lineage-specific transcriptional dependency in breast cancer
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by genome tiling array
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
30380416
Submission date
May 17, 2018
Last update date
Feb 14, 2022
Contact name
Kornelia Polyak
E-mail(s)
kornelia_polyak@dfci.harvard.edu
Phone
617-632-2106
Organization name
Dana-Farber Cancer Institute
Department
Medical Oncology
Lab
Polyak
Street address
450 Brookline Ave
City
Boston
State/province
MA
ZIP/Postal code
02215
Country
USA
Platforms (2)
GPL13534
Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
Samples (193)
Less...
More...
GSM3145540
HCC3153_sh1_dox-_d3 [RNA-seq]
GSM3145541
HCC3153_sh1_dox+_d3 [RNA-seq]
GSM3145542
HCC3153_sh1_dox-_d4 [RNA-seq]
GSM3145543
HCC3153_sh1_dox+_d4 [RNA-seq]
GSM3145544
HCC3153_sh1_dox-_d5 [RNA-seq]
GSM3145545
HCC3153_sh1_dox+_d5 [RNA-seq]
GSM3145546
HCC3153_sh2_dox-_d3 [RNA-seq]
GSM3145547
HCC3153_sh2_dox+_d3 [RNA-seq]
GSM3145548
HCC3153_sh2_dox-_d4 [RNA-seq]
GSM3145549
HCC3153_sh2_dox+_d4 [RNA-seq]
GSM3145550
HCC3153_sh2_dox-_d5 [RNA-seq]
GSM3145551
HCC3153_sh2_dox+_d5 [RNA-seq]
GSM3145552
SUM159_sh1_dox-_d3 [RNA-seq]
GSM3145553
SUM159_sh1_dox+_d3 [RNA-seq]
GSM3145554
SUM159_sh1_dox-_d4 [RNA-seq]
GSM3145555
SUM159_sh1_dox+_d4 [RNA-seq]
GSM3145556
SUM159_sh1_dox-_d5 [RNA-seq]
GSM3145557
SUM159_sh1_dox+_d5 [RNA-seq]
GSM3145558
SUM159_sh2_dox-_d3 [RNA-seq]
GSM3145559
SUM159_sh2_dox+_d3 [RNA-seq]
GSM3145560
SUM159_sh2_dox-_d4 [RNA-seq]
GSM3145561
SUM159_sh2_dox+_d4 [RNA-seq]
GSM3145562
SUM159_sh2_dox-_d5 [RNA-seq]
GSM3145563
SUM159_sh2_dox+_d5 [RNA-seq]
GSM3145564
COG-N-278 [RNA-seq]
GSM3145565
NLF [RNA-seq]
GSM3145566
COG-N-367 [RNA-seq]
GSM3145567
FC-IBC02 [RNA-seq]
GSM3145568
COG-N-305 [RNA-seq]
GSM3145569
LS [RNA-seq]
GSM3145570
SMS-KCN [RNA-seq]
GSM3145571
Blin1 [RNA-seq]
GSM3145572
PMC42 [RNA-seq]
GSM3145573
MHH-NB-11 [RNA-seq]
GSM3145574
MOLM14 [RNA-seq]
GSM3145575
UOCB1 [RNA-seq]
GSM3145576
HCC3153 [RNA-seq]
GSM3145577
NGP [RNA-seq]
GSM3145578
TM87 [RNA-seq]
GSM3145579
HCA2 [RNA-seq]
GSM3145580
HCA24 [RNA-seq]
GSM3145581
HCT116 ARID1A WT [RNA-seq]
GSM3145582
HCT116 ARID1A HET [RNA-seq]
GSM3145583
HCT116 ARID1A KO [RNA-seq]
GSM3145584
KOPT-K1 [RNA-seq]
GSM3145585
Nalm14 [RNA-seq]
GSM3145586
CHP-126 [RNA-seq]
GSM3145587
CHP-134 [RNA-seq]
GSM3145588
NB69 [RNA-seq]
GSM3145589
SMS-SAN [RNA-seq]
GSM3145590
C4-2 [RNA-seq]
GSM3145591
C4-2B [RNA-seq]
GSM3145592
CWR22Rv1 [RNA-seq]
GSM3145593
LAPC-4 [RNA-seq]
GSM3145594
VCaP [RNA-seq]
GSM3145595
2004 [RNA-seq]
GSM3145596
BT12 [RNA-seq]
GSM3145597
TTC 549 [RNA-seq]
GSM3145598
TTC 642 [RNA-seq]
GSM3145599
TTC 709 [RNA-seq]
GSM3145600
SUM149R w/o JQ1 [RNA-seq]
GSM3145601
SUM159R w/o JQ1 [RNA-seq]
GSM3145602
LNCaP [RNA-seq]
GSM3145603
LNCaP-abl [RNA-seq]
GSM3145604
UACC3199 [RNA-seq]
GSM3145605
MDA-IBC-3 [RNA-seq]
GSM3145606
C32 [RNA-seq]
GSM3145607
C80 [RNA-seq]
GSM3145608
C99 [RNA-seq]
GSM3145609
HCA-7 [RNA-seq]
GSM3145610
LIM1899 [RNA-seq]
GSM3145611
LIM2405 [RNA-seq]
GSM3145612
LIM2551 [RNA-seq]
GSM3145613
SW1222 [RNA-seq]
GSM3145614
BE(2)-C [RNA-seq]
GSM3145615
GI-ME-N [RNA-seq]
GSM3145616
Kelly [RNA-seq]
GSM3145617
21NT [RNA-seq]
GSM3145618
21PT [RNA-seq]
GSM3145619
21MT1 [RNA-seq]
GSM3145620
21MT2 [RNA-seq]
GSM3145621
input for HCC3153_sh*_dox* samples [ChIP-seq]
GSM3145622
HCC3153_sh1_dox-_H3K27me3_1 [ChIP-seq]
GSM3145623
HCC3153_sh1_dox-_H3K27me3_2 [ChIP-seq]
GSM3145624
HCC3153_sh1_dox+_H3K27me3_1 [ChIP-seq]
GSM3145625
HCC3153_sh1_dox+_H3K27me3_2 [ChIP-seq]
GSM3145626
HCC3153_sh2_dox-_H3K27me3_1 [ChIP-seq]
GSM3145627
HCC3153_sh2_dox-_H3K27me3_2 [ChIP-seq]
GSM3145628
HCC3153_sh2_dox+_H3K27me3_1 [ChIP-seq]
GSM3145629
HCC3153_sh2_dox+_H3K27me3_2 [ChIP-seq]
GSM3145630
HCC3153_sh1_dox-_GATAD2A_1 [ChIP-seq]
GSM3145631
HCC3153_sh1_dox-_GATAD2A_2 [ChIP-seq]
GSM3145632
HCC3153_sh1_dox+_GATAD2A_1 [ChIP-seq]
GSM3145633
HCC3153_sh1_dox+_GATAD2A_2 [ChIP-seq]
GSM3145634
HCC3153_sh2_dox-_GATAD2A_1 [ChIP-seq]
GSM3145635
HCC3153_sh2_dox-_GATAD2A_2 [ChIP-seq]
GSM3145636
HCC3153_sh2_dox+_GATAD2A_1 [ChIP-seq]
GSM3145637
HCC3153_sh2_dox+_GATAD2A_2 [ChIP-seq]
GSM3145638
HCC3153_sh1_dox-_GATAD2B_1 [ChIP-seq]
GSM3145639
HCC3153_sh1_dox-_GATAD2B_2 [ChIP-seq]
GSM3145640
HCC3153_sh1_dox+_GATAD2B_1 [ChIP-seq]
GSM3145641
HCC3153_sh1_dox+_GATAD2B_2 [ChIP-seq]
GSM3145642
HCC3153_sh2_dox-_GATAD2B_1 [ChIP-seq]
GSM3145643
HCC3153_sh2_dox-_GATAD2B_2 [ChIP-seq]
GSM3145644
HCC3153_sh2_dox+_GATAD2B_1 [ChIP-seq]
GSM3145645
HCC3153_sh2_dox+_GATAD2B_2 [ChIP-seq]
GSM3145646
HCC3153_sh1_dox-_H3K27ac_1 [ChIP-seq]
GSM3145647
HCC3153_sh1_dox-_H3K27ac_2 [ChIP-seq]
GSM3145648
HCC3153_sh1_dox+_H3K27ac_1 [ChIP-seq]
GSM3145649
HCC3153_sh1_dox+_H3K27ac_2 [ChIP-seq]
GSM3145650
HCC3153_sh2_dox-_H3K27ac_1 [ChIP-seq]
GSM3145651
HCC3153_sh2_dox-_H3K27ac_2 [ChIP-seq]
GSM3145652
HCC3153_sh2_dox+_H3K27ac_1 [ChIP-seq]
GSM3145653
HCC3153_sh2_dox+_H3K27ac_2 [ChIP-seq]
GSM3145654
HCC3153_sh1_dox-_TRPS1_1 [ChIP-seq]
GSM3145655
HCC3153_sh1_dox-_TRPS1_2 [ChIP-seq]
GSM3145656
HCC3153_sh1_dox+_TRPS1_1 [ChIP-seq]
GSM3145657
HCC3153_sh1_dox+_TRPS1_2 [ChIP-seq]
GSM3145658
HCC3153_sh2_dox-_TRPS1_1 [ChIP-seq]
GSM3145659
HCC3153_sh2_dox-_TRPS1_2 [ChIP-seq]
GSM3145660
HCC3153_sh2_dox+_TRPS1_1 [ChIP-seq]
GSM3145661
HCC3153_sh2_dox+_TRPS1_2 [ChIP-seq]
GSM3145662
input for SUM159_TRPS1 samples [ChIP-seq]
GSM3145663
SUM159_TRPS1_1 [ChIP-seq]
GSM3145664
SUM159_TRPS1_2 [ChIP-seq]
GSM3145665
input for IBC3_TRPS1 samples [ChIP-seq]
GSM3145666
IBC3_TRPS1_1 [ChIP-seq]
GSM3145667
IBC3_TRPS1_2 [ChIP-seq]
GSM3145685
genomic DNA from 2004
GSM3145686
genomic DNA from 21MT1
GSM3145687
genomic DNA from 21MT2
GSM3145688
genomic DNA from 21NT
GSM3145689
genomic DNA from 21PT
GSM3145690
genomic DNA from BE(2)-C
GSM3145691
genomic DNA from BT12
GSM3145692
genomic DNA from Blin1
GSM3145693
genomic DNA from C32
GSM3145694
genomic DNA from C4-2
GSM3145695
genomic DNA from C4-2B
GSM3145696
genomic DNA from C80
GSM3145697
genomic DNA from C99
GSM3145698
genomic DNA from CHP-126
GSM3145699
genomic DNA from CHP134
GSM3145700
genomic DNA from COG-N-278
GSM3145701
genomic DNA from COG-N-305
GSM3145702
genomic DNA from COG-N-367
GSM3145703
genomic DNA from CWR_22RV1
GSM3145704
genomic DNA from FC-IBC02
GSM3145705
genomic DNA from GI-ME-N
GSM3145706
genomic DNA from HCA2
GSM3145707
genomic DNA from HCA24
GSM3145708
genomic DNA from HCA7
GSM3145709
genomic DNA from HCC3153
GSM3145710
genomic DNA from HCT116 ARID1A HET
GSM3145711
genomic DNA from HCT116 ARID1A KO
GSM3145712
genomic DNA from HCT116 ARID1A WT
GSM3145713
genomic DNA from KOPT-K1
GSM3145714
genomic DNA from Kelly
GSM3145715
genomic DNA from LAPC-4
GSM3145716
genomic DNA from LIM1899
GSM3145717
genomic DNA from LIM2405
GSM3145718
genomic DNA from LIM2551
GSM3145719
genomic DNA from LNCaP-abl
GSM3145720
genomic DNA from LNCaP
GSM3145721
genomic DNA from LS
GSM3145722
genomic DNA from MDA-IBC-3
GSM3145723
genomic DNA from MHH-NB-11
GSM3145724
genomic DNA from MOLM14
GSM3145725
genomic DNA from NB69
GSM3145726
genomic DNA from NGP
GSM3145727
genomic DNA from NLF
GSM3145728
genomic DNA from Nalm14
GSM3145729
genomic DNA from PMC42
GSM3145730
genomic DNA from SMS-KCN
GSM3145731
genomic DNA from SMS-SAN
GSM3145732
genomic DNA from SUM149R treated with JQ1
GSM3145733
genomic DNA from SUM149R
GSM3145734
genomic DNA from SUM149
GSM3145735
genomic DNA from SUM159R treated with JQ1
GSM3145736
genomic DNA from SUM159R
GSM3145737
genomic DNA from SUM159
GSM3145738
genomic DNA from SW1222
GSM3145739
genomic DNA from TM87
GSM3145740
genomic DNA from TTC549
GSM3145741
genomic DNA from TTC642
GSM3145742
genomic DNA from TTC709
GSM3145743
genomic DNA from UACC-3199
GSM3145744
genomic DNA from UOCB1
GSM3145745
genomic DNA from VCaP
GSM3439102
shTRPS1_ctrl_HDAC2_1 [ChIP-seq]
GSM3439103
shTRPS1_ctrl_HDAC2_2 [ChIP-seq]
GSM3439104
shTRPS1_ctrl_MTA2_1 [ChIP-seq]
GSM3439105
shTRPS1_ctrl_MTA2_2 [ChIP-seq]
This SuperSeries is composed of the following SubSeries:
GSE114597
TRPS1 is a lineage-specific transcriptional dependency in breast cancer [Seq]
GSE114598
TRPS1 is a lineage-specific transcriptional dependency in breast cancer [methylation array]
Relations
BioProject
PRJNA471878
Download family
Format
SOFT formatted family file(s)
SOFT
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File type/resource
GSE114600_RAW.tar
209.6 Mb
(http)
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TAR (of NARROWPEAK)
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