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Series GSE115372 Query DataSets for GSE115372
Status Public on Jun 11, 2018
Title RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (Methyl-Seq)
Organism Oryza sativa
Experiment type Methylation profiling by high throughput sequencing
Summary methylC-seq profiling of seeds, at 0 h and 24 h after imbibition and following 4-d of growth under aerobic and anerobic conditions, as well as following re-oxygenation (3dN1dA) in rice.
 
Overall design gDNA was extracted from samples collected at each time point in triplicate. The time points were: 0 h (dry seed), 24 h and 4 days under aerobic (A) and anaerobic (N) conditions, as well as 3‐day‐old seedlings grown under anaerobic conditions that were switched to air for 1 day.
 
Contributor(s) Narsai R
Citation(s) 27859855
Submission date Jun 05, 2018
Last update date Jun 13, 2018
Contact name Reena Narsai
Organization name La trobe University
Street address 5 Ring road
City Bundoora
ZIP/Postal code 3083
Country Australia
 
Platforms (1)
GPL25149 Illumina HiSeq 1500 (Oryza sativa)
Samples (18)
GSM3176809 dry seed 0 h Methyl-Seq Replicate 1
GSM3176810 dry seed 0 h Methyl-Seq Replicate 2
GSM3176811 dry seed 0 h Methyl-Seq Replicate 3
This SubSeries is part of SuperSeries:
GSE115373 RNA-seq and DNA methylomes of germinating rice and developing coleoptiles
Relations
BioProject PRJNA474723
SRA SRP149824

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE115372_CNN_out_DMR_rice_0hv24hA_24hN.txt.gz 1.1 Mb (ftp)(http) TXT
GSE115372_CNN_out_Dmr_rice_4dAv4dN.txt.gz 214.4 Kb (ftp)(http) TXT
GSE115372_CNN_out_Dmr_rice_4dNv3dN1dA.txt.gz 83.6 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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