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Series GSE115936 Query DataSets for GSE115936
Status Public on Feb 13, 2019
Title Simultaneous quantification of antibody-RNA conjugates and the transcriptome by single cell RNA-sequencing
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Undifferentiated and differentiated Keratinocytes (AG1478 treated) were stained with antibody-RNA conjugates (targeting EGFR and ITGA6) to measure protein-based differentiation changes in conjunction with single-cell transcriptomics.
Overall design Two 384 wells plates for untreated and two 384 wells plates for AG1478 treated cells were processed for single cell transcriptomics.
Contributor(s) Gerlach JP, Mulder KW
Citation(s) 30728416
Submission date Jun 18, 2018
Last update date Mar 26, 2019
Contact name Jan Patrick Gerlach
Organization name Radboud Institute for Molecular Life Sciences
Department Molecular Developmental Biology
Street address Geert Grooteplein Zuid 28
City Nijmegen
ZIP/Postal code 6500HB
Country Netherlands
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (4)
GSM3195601 Untreated_384wPlate1
GSM3195602 Untreated_384wPlate2
GSM3195603 AG1478_384wPlate1
This SubSeries is part of SuperSeries:
GSE115981 RAID allows multiplexed quantification of intracellular (phospho-)proteins and transcriptomes from fixed single cells
BioProject PRJNA476555
SRA SRP150758

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE115936_ARC_Rawcounts_EGFR_ITGA6.csv.gz 12.8 Kb (ftp)(http) CSV 5.2 Mb (ftp)(http) TAB
GSE115936_mRNA_counts_SUB10K_genenames_JPGIII170.csv.gz 2.0 Mb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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