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GEO accession:
Series GSE116152
Query DataSets for GSE116152
Status
Public on Apr 23, 2019
Title
Dynamic changes in the epigenetic landscape are mandatory for acinar cell reprogramming and pancreatic carcinogenesis
Organism
Mus musculus
Experiment type
Expression profiling by array
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
30954952
Submission date
Jun 22, 2018
Last update date
Apr 25, 2019
Contact name
Tobias Straub
E-mail(s)
tstraub@med.uni-muenchen.de
Organization name
LMU Munich
Department
Biomedical Center, Bioinformatics
Street address
Großhadener Str. 9
City
Martinsried
ZIP/Postal code
82152
Country
Germany
Platforms (2)
GPL13112
Illumina HiSeq 2000 (Mus musculus)
GPL16570
[MoGene-2_0-st] Affymetrix Mouse Gene 2.0 ST Array [transcript (gene) version]
Samples (32)
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GSM3211436
acinar-to-ductal metaplasia, replicate 1
GSM3211437
acinar-to-ductal metaplasia, replicate 2
GSM3211438
acinar-to-ductal metaplasia, replicate 3
GSM3211439
tumor cells, replicate 1
GSM3211440
tumor cells, replicate 2
GSM3211441
tumor cells, replicate 3
GSM3211442
embryonic acinar cells, replicate 1
GSM3211443
embryonic acinar cells, replicate 2
GSM3211444
embryonic acinar cells, replicate 3
GSM3211445
adult acinar cells, replicate 1
GSM3211446
adult acinar cells, replicate 2
GSM3211447
adult acinar cells, replicate 3
GSM3211448
H3K4me3 embryonic acinar cells
GSM3211449
H2AK119ub embryonic acinar cells
GSM3211450
Input embryonic acinar cells 1
GSM3211451
H3K4me3 adult acinar cells
GSM3211452
Input adult acinar cells 1
GSM3211453
H3K4me3 acinar-to-ductal-metaplasia
GSM3211454
Input acinar-to-ductal-metaplasia 1
GSM3211455
H3K4me3 tumor cells
GSM3211456
Input tumor cells 1
GSM3211457
H3K27me3 adult acinar cells
GSM3211458
H2AK119ub adult acinar cells
GSM3211459
Input adult acinar cells 2
GSM3211460
H3K27me3 embryonic acinar cells
GSM3211461
Input embryonic acinar cells 2
GSM3211462
H3K27me3 acinar-to-ductal-metaplasia
GSM3211463
H2AK119ub acinar-to-ductal-metaplasia
GSM3211464
Input acinar-to-ductal-metaplasia 2
GSM3211465
H3K27me3 tumor cells
GSM3211466
H2AK119ub tumor cells
GSM3211467
Input tumor cells 2
This SuperSeries is composed of the following SubSeries:
GSE116150
Dynamic changes in the epigenetic landscape are mandatory for acinar cell reprogramming and pancreatic carcinogenesis [microarray]
GSE116151
Dynamic changes in the epigenetic landscape are mandatory for acinar cell reprogramming and pancreatic carcinogenesis [ChIP-seq]
Relations
BioProject
PRJNA477452
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE116152_RAW.tar
4.7 Gb
(http)
(custom)
TAR (of BEDGRAPH, CEL)
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