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Series GSE116491 Query DataSets for GSE116491
Status Public on Jul 03, 2018
Title 16S profile of stool from conventional unifected and C.rodentium infected mice
Organism Mus musculus
Experiment type Other
Summary We aim to determine if mice in our mouse colony had similar of different microbiomes. To do this, we perfromed 16S sequencing of stool from unifected mice of the gentotypes listed below. We also looked at how infection causes dysbiosis of the mircobiome, measuring 16S sequencing over a C.rodentium infection timecourse.
 
Overall design The 16S profile of 3-4 mice were analyzed for each genotype and condition listed
 
Contributor(s) Martin PK, Yeung F
Citation(s) 30202015
Submission date Jul 02, 2018
Last update date May 17, 2019
Contact name Patricia K Martin
E-mail(s) patricia.kimimila@gmail.com
Phone 7079724714
Organization name NYU School of Medicine
Department Pathology
Lab Cadwell
Street address 564 1st Ave, 12E
City New York
State/province NY
ZIP/Postal code 10016
Country USA
 
Platforms (1)
GPL16417 Illumina MiSeq (Mus musculus)
Samples (153)
GSM3240151 Sample1_B6_1
GSM3240152 Sample10_HM_5
GSM3240153 Sample100_B6_5
Relations
BioProject PRJNA478835
SRA SRP151741

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE116491_table.txt.gz 19.8 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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